GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004977-TA|BGIBMGA004977-PA|IPR009027|Ribosomal protein
L9 N-terminal-like, IPR000244|Ribosomal protein L9
         (254 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 173 PESAIEMPPVQIKGPDPNLLDKEFYVTVTIN 203
           P+ A   PP    GPD   LDK F +    N
Sbjct: 339 PKPAPPPPPPSSSGPDSAKLDKIFDIATKEN 369


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 157 QPWHLKASFRKSGFVVPESAIEMPPVQIKGPDPNLLDKEF 196
           Q +H+   F K   V  ++ + +  +  +    NL+DK+F
Sbjct: 9   QHYHITPVFTKQKKVKEDTELNLQTIFNEDKLDNLMDKQF 48


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,257
Number of Sequences: 429
Number of extensions: 3841
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 254
length of database: 140,377
effective HSP length: 56
effective length of query: 198
effective length of database: 116,353
effective search space: 23037894
effective search space used: 23037894
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)