GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004976-TA|BGIBMGA004976-PA|IPR001606|AT-rich interaction
region
         (1678 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.98 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   3.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   5.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   5.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   5.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   6.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 27.5 bits (58), Expect = 0.98
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 2/109 (1%)

Query: 1060 KITENVKECVASKELVTQIILEPIIETNTETKYVTEEAVKQKEVPMEIIIAPERPKTPPQ 1119
            K  +NV     +K L+   +++P      ++   T+E   +KE        P       Q
Sbjct: 754  KNKKNVGSMSRNKALLP--VIKPANVNKEQSPNSTKETTPKKERKTATTTQPVISSRKEQ 811

Query: 1120 QRKEIHKVNLLSVPVSISNVQMNVTLTVANPVLKQEPVKESSLKLLTVP 1168
            ++ E   +N   V    S V  NVT T+  P      +  +++ + ++P
Sbjct: 812  KKSEEKNINDHCVTTEQSVVVTNVTTTINTPTTSVISMSGTTVPITSLP 860


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 5/108 (4%)

Query: 763 PPKKLDEKGPPSKILPRPKEAKTGESSGSNKPRKRPVRTVSTPT-NLSPSKKPRPMPTTC 821
           PPK++  K P   +LPRP    T   S    P K      ST T N       +      
Sbjct: 641 PPKRI-RKMPSMPLLPRPISCHTTPDSFIEAPNKTLPSLPSTLTKNSKQGLFSKLFAKKV 699

Query: 822 HQGRDFDLNEIRSELKGLHSVKQDHDESSLKQDPHDKTSRLMLPAATM 869
            + +D  LN  +   + L +     + S L  +     S+L +P A++
Sbjct: 700 KKDKDIILNVPKESTQSLTTT---GNVSYLTTNNTSNNSQLQIPRASL 744



 Score = 25.4 bits (53), Expect = 3.9
 Identities = 19/83 (22%), Positives = 31/83 (37%)

Query: 1225 PPPGFLLQSEGPKIAEKLLKAINSAKRLSMSPPPTDDRSDASKTEPNKFNKPEIKVSSQS 1284
            P P    + +G +  E+ L  +   +   M   P   R  +  T P+ F +   K     
Sbjct: 619  PSPPVTTKRDGTQETEERLPPLPPKRIRKMPSMPLLPRPISCHTTPDSFIEAPNKTLPSL 678

Query: 1285 PELKTISSKSDTVKPLVKSELKK 1307
            P   T +SK      L   ++KK
Sbjct: 679  PSTLTKNSKQGLFSKLFAKKVKK 701


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 794 PRKRPVRTVSTPTNLSPSKKPRPMPTTCHQGRDFDLNE 831
           PR    +TVST  ++   ++    P+  H+   FDL+E
Sbjct: 336 PRDLTTQTVSTTADVLQEEEEEYSPSVQHEFVTFDLDE 373


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
            beta 1 subunit protein.
          Length = 603

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 1316 CIFGEPSNLTDAKRDATDVKKVRPKDEIRKEVLSPRLQSPLNILERRRSV 1365
            C+FG   NLT       +  K+   ++  + +  P  Q    +LE R  V
Sbjct: 532  CLFGNTVNLTSRTETTGEPGKINVSEDAYRYLCMPENQDSQFLLEYRGPV 581


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
            beta 1 subunit protein.
          Length = 603

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 1316 CIFGEPSNLTDAKRDATDVKKVRPKDEIRKEVLSPRLQSPLNILERRRSV 1365
            C+FG   NLT       +  K+   ++  + +  P  Q    +LE R  V
Sbjct: 532  CLFGNTVNLTSRTETTGEPGKINVSEDAYRYLCMPENQDSQFLLEYRGPV 581


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 674 TQSESKVTYEAKVIEISSEGMLRVHYTGWNTRYDEWIKPQRIALNVTQHEQRNKKGTG 731
           T  E KVT   +   +  E  +R H  G      +W+K    ALN  Q ++ +  G G
Sbjct: 400 TIPEVKVTPRFQAKRLKEEANIRCHVAGEPLPRVQWLKNDE-ALNHDQPDKYDLIGNG 456


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 408,765
Number of Sequences: 429
Number of extensions: 17489
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 12
length of query: 1678
length of database: 140,377
effective HSP length: 67
effective length of query: 1611
effective length of database: 111,634
effective search space: 179842374
effective search space used: 179842374
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 50 (24.2 bits)