GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004975-TA|BGIBMGA004975-PA|undefined
         (234 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   1.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   5.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.6  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   5.6  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 71  LPLDKNHPNYKEKPCLTLNQDNVLLEGLSQAQVLTKTI 108
           LP+++N P Y    C      + L   L+Q +   K I
Sbjct: 152 LPMNRNRPAYLASKCALTTLTDCLRSELAQCESNIKVI 189


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 201 NLHIHRFKKTIKEHLCNKAYYKVNDYLEDCTK 232
           +L I+  K+TI+    N+ Y    +Y++  TK
Sbjct: 435 DLSINEEKRTIENEQLNRMYKSYPNYIDKETK 466


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 190 RLYNKIPHDVQNLHIHR 206
           RL   + HD++N HI R
Sbjct: 146 RLMRCLHHDIENAHIRR 162


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 29  IDTGVEKKLKDMGIEVQDALEFVKGKREEREHIQIIGP 66
           +D G    +   G     A+ FV G +E+R+   + GP
Sbjct: 168 VDAGDSMFVHTFGAYFGLAISFVFGMKEKRKEHHLEGP 205


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 217 NKAYYKVNDYLED 229
           NK  YK NDY+ D
Sbjct: 939 NKKVYKQNDYIVD 951


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 55  REEREHIQIIGPYEQPLPLDKNHPNYKEKPCLTLNQ 90
           R++RE +Q I P+++      N  N+K      L Q
Sbjct: 141 RKKREFMQKIWPFKEYQMNGNNITNFKNSNIFQLKQ 176


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.138    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,581
Number of Sequences: 429
Number of extensions: 3176
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 234
length of database: 140,377
effective HSP length: 56
effective length of query: 178
effective length of database: 116,353
effective search space: 20710834
effective search space used: 20710834
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)