GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004974-TA|BGIBMGA004974-PA|IPR000418|Ets
         (211 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                92   4e-21
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   1.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 91.9 bits (218), Expect = 4e-21
 Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 2/81 (2%)

Query: 105 LWQFLLELLTDKN-CQGFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLR 162
           LW+FLL+LL D+  C  +I WT  +   FKL D   V+R WG+ KNKP MNYE + R LR
Sbjct: 460 LWEFLLKLLQDREYCPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYETMGRALR 519

Query: 163 YYYDKNIIHKTAGKRYVYRFV 183
           YYY + I+ K  G+R VY+FV
Sbjct: 520 YYYQRGILAKVDGQRLVYQFV 540


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 6/22 (27%), Positives = 14/22 (63%)

Query: 111 ELLTDKNCQGFISWTGDGWEFK 132
           ++   + C GF+++ GD ++ K
Sbjct: 412 QIAFSRGCSGFVAFNGDQYDLK 433


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 115 DKNCQ-GFISWTGDGWEFKLTDPDE 138
           D+ C+  F SWT DG++  L   DE
Sbjct: 159 DQRCEMKFGSWTYDGFQLDLQLQDE 183


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 121 FISWTGDGWEFKLTDPDEV 139
           F SWT DG++  L   DE+
Sbjct: 167 FGSWTYDGFQVDLRHIDEI 185


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 121 FISWTGDGWEFKLTDPDE 138
           F SWT DG++  L   DE
Sbjct: 171 FGSWTYDGFKVDLRHMDE 188


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.139    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,502
Number of Sequences: 429
Number of extensions: 1612
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 211
length of database: 140,377
effective HSP length: 55
effective length of query: 156
effective length of database: 116,782
effective search space: 18217992
effective search space used: 18217992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)