GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004972-TA|BGIBMGA004972-PA|IPR003118|Sterile alpha
motif/pointed, IPR010993|Sterile alpha motif homology
         (206 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.13 
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           24   1.2  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           24   1.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 21  QNEQLEQIRSEPGTDRGRGAQISASQNRSAD------IPSQVPPLTPGTNKKMAEALKAT 74
           Q +Q +Q +  P T+      I    + SA       IPS  P  TPG + K  E   A 
Sbjct: 847 QQQQQQQQQRGPMTNDDFNPNIEEEASDSAQGRAILKIPSYKPASTPGCSSKNGEPTSAA 906

Query: 75  FA 76
           FA
Sbjct: 907 FA 908


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 1   MNLIETPKKKDISKEKFKLYQNEQLEQIRSEPGTDRGRGAQISASQNRSADI 52
           + L+E  KK+  +KE+F+  +   LE +R   G  +    +++ + N++ D+
Sbjct: 111 IGLVERHKKRGQTKEEFQNLKEVMLEVLRQALG--KQYTPEVAEAWNKTLDM 160


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 1   MNLIETPKKKDISKEKFKLYQNEQLEQIRSEPGTDRGRGAQISASQNRSADI 52
           + L+E  KK+  +KE+F+  +   LE +R   G  +    +++ + N++ D+
Sbjct: 111 IGLVERHKKRGQTKEEFQNLKEVMLEVLRQALG--KQYTPEVAEAWNKTLDM 160


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 43  SASQNRSADIPSQVP 57
           S SQN S+ +P Q+P
Sbjct: 634 SPSQNHSSAVPDQMP 648


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 14  KEKFKLYQNEQLEQIRSEPGTDR-GRGAQIS--ASQNRSADIPSQVPPLTPGTNKKMAEA 70
           KE FK    E + +  S P + + G   Q+S   S  R+    SQ+PP      +++AEA
Sbjct: 693 KEHFKKAL-ELMNRAVSVPQSHQPGAMEQVSYLTSLERTQPTMSQMPPTAQPRMERLAEA 751

Query: 71  LK 72
           ++
Sbjct: 752 VR 753


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,880
Number of Sequences: 429
Number of extensions: 3161
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 206
length of database: 140,377
effective HSP length: 55
effective length of query: 151
effective length of database: 116,782
effective search space: 17634082
effective search space used: 17634082
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)