GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004968-TA|BGIBMGA004968-PA|undefined
         (111 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              28   0.023
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   2.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   2.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   6.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   7.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 28.3 bits (60), Expect = 0.023
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 54   EISPYATFAVGGEAATATLDHTLQFRTFGHRDN 86
            EI PYATF + G          +QF+TF H  N
Sbjct: 1721 EICPYATFHLLGFREEMDPSKAMQFQTFPHPGN 1753


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 21  GSTDKSVCPEQQNIRNCQHDYKH 43
           G+  K       ++RN  HD++H
Sbjct: 204 GNESKKYATSSNSLRNRTHDFQH 226


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)

Query: 44   DKLSPASDVYEISPYATFAV--GGEAATATL 72
            DK+   ++  +ISPYATF +  GG  + A L
Sbjct: 1685 DKIPETAE--DISPYATFQLSEGGGGSLAGL 1713


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)

Query: 44   DKLSPASDVYEISPYATFAV--GGEAATATL 72
            DK+   ++  +ISPYATF +  GG  + A L
Sbjct: 1681 DKIPETAE--DISPYATFQLSEGGGGSLAGL 1709


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 21  GSTDKSVCPEQQNIRNCQHDYKH 43
           G+  K       ++R+  HD++H
Sbjct: 204 GNESKKYATSSNSLRSRTHDFQH 226


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 77  QFRTFGHRDNDAPPH 91
           QFR  GHR   +  H
Sbjct: 187 QFRVLGHRQRHSTIH 201


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.132    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,987
Number of Sequences: 429
Number of extensions: 1365
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 111
length of database: 140,377
effective HSP length: 50
effective length of query: 61
effective length of database: 118,927
effective search space:  7254547
effective search space used:  7254547
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)