GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004964-TA|BGIBMGA004964-PA|IPR000433|Zinc finger,
ZZ-type, IPR001005|Myb, DNA-binding, IPR009057|Homeodomain-like
         (369 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.34 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.34
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)

Query: 300 TRLEECAHHD-QHAALRRSTHHDR 322
           +RL  C HHD ++A +RR+ H +R
Sbjct: 145 SRLMRCLHHDIENAHIRRTLHMNR 168


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 11/50 (22%), Positives = 18/50 (36%)

Query: 296  LAGVTRLEECAHHDQHAALRRSTHHDRNLCSALSLPPAQYVTLKGVLLRR 345
            L G         H  +  L    +H+  +    + PP    ++K V  RR
Sbjct: 1719 LGGAAEASAAGLHPNNTLLHSFMYHEHAMTEGCASPPPAATSMKSVSSRR 1768


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 11/50 (22%), Positives = 18/50 (36%)

Query: 296  LAGVTRLEECAHHDQHAALRRSTHHDRNLCSALSLPPAQYVTLKGVLLRR 345
            L G         H  +  L    +H+  +    + PP    ++K V  RR
Sbjct: 1715 LGGAAEASAAGLHPNNTLLHSFMYHEHAMTEGCASPPPAATSMKSVSSRR 1764


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 93  DIAKHIETRTPEEAKDEYITRYLEGTIGKATWGNIESTSRPSLHCADKDDGPLGPTAVSR 152
           D+++   +   EEA    + +       K T GN+ +   PS +    +DG +    +S 
Sbjct: 313 DLSESETSSDEEEADTRPLKKEPITQSNKRTAGNLATREHPSRNFTMSEDGMIEVIPLSA 372

Query: 153 LP 154
           +P
Sbjct: 373 IP 374


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 14/50 (28%), Positives = 21/50 (42%)

Query: 106  AKDEYITRYLEGTIGKATWGNIESTSRPSLHCADKDDGPLGPTAVSRLPN 155
            A  +Y  R+L    GK++     +++ P   C D D   L    V   PN
Sbjct: 1026 AYSKYGLRFLRAKPGKSSGAAAMASAAPMPACFDSDRERLYDCYVCYSPN 1075


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 135  LHCADKDDGPLGPTAVSRL 153
            +HC  + D P  P A+  L
Sbjct: 1171 IHCQTEQDAPEAPIAIKAL 1189


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,922
Number of Sequences: 429
Number of extensions: 4072
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 6
length of query: 369
length of database: 140,377
effective HSP length: 59
effective length of query: 310
effective length of database: 115,066
effective search space: 35670460
effective search space used: 35670460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)