GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004956-TA|BGIBMGA004956-PA|IPR000682|Protein-L-
isoaspartate(D-aspartate) O-methyltransferase
         (206 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.39 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.39 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.39 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   3.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   6.3  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 15  RNLRTNGIIKSDTVANAMLAVDRKNYCPSSP 45
           R +++NG+    TV+ A+  V R N  P SP
Sbjct: 886 RRIQSNGLNDPTTVSLAVDTVARSNVTPRSP 916


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 163 PTLPQA-LIDQLKPGGRLIVPVGPEG 187
           P LP A LID+LKP  R  + V  EG
Sbjct: 961 PPLPYAALIDELKPATRYTIRVIAEG 986


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 163 PTLPQA-LIDQLKPGGRLIVPVGPEG 187
           P LP A LID+LKP  R  + V  EG
Sbjct: 957 PPLPYAALIDELKPATRYTIRVIAEG 982


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 57  ATISAPHMHAHALEKLKNQLVPGEKALDVGSGSG 90
           A I +PH    +++K  N+   G+    + SG G
Sbjct: 375 ARIFSPHEENESVDKHPNRRARGQLRTKIESGEG 408


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 17/130 (13%)

Query: 16  NLRTNGIIKSDTVANAMLAVDRK--NYCPSS------PYQDSPQSI-GFSATISAPHMHA 66
           +LRT  II  D    + L +DR+  N   SS       Y+DS  S+ G+    + P ++ 
Sbjct: 298 DLRTANIIADDPEGVSCLVIDRETFNQLISSLDEIRTRYKDSSSSVEGWENRATIPELN- 356

Query: 67  HALEKLKNQLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQND 126
                L+ Q +     L VG   G+    +  + G++ R   ++ + +   + T+  Q+ 
Sbjct: 357 EEFRDLRLQDLRPLATLGVG---GFGRVELVQIAGDSSRSFALKQMKKAQIVETRQQQH- 412

Query: 127 NPSLLSSERI 136
              ++S +RI
Sbjct: 413 ---IMSEKRI 419


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,575
Number of Sequences: 429
Number of extensions: 2122
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 206
length of database: 140,377
effective HSP length: 55
effective length of query: 151
effective length of database: 116,782
effective search space: 17634082
effective search space used: 17634082
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)