GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004955-TA|BGIBMGA004955-PA|IPR000215|Proteinase
inhibitor I4, serpin, IPR003689|Zinc/iron permease
         (536 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     27   0.39 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.90 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   8.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   8.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   8.4  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 27.1 bits (57), Expect = 0.39
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 163 FMMYLVEELVHLYIHAREHKPSEKNDAKPFS-LRKSISGNDPE-INQETKQIENETNS 218
           + M  VE+ V +YI  +  +PS+   ++PF  L   +  +DP+ + ++ ++I N  N+
Sbjct: 291 YRMQQVEQPVQVYIQLK--RPSDGATSEPFPFLMLPLGADDPDSLRRKRQKINNSQNA 346


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.8 bits (54), Expect = 0.90
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 179 REHKPSEKNDAKPFSLRKSISGNDPEINQETKQIENETNSGHSHLVLDSSQEDSVV 234
           +E  P+   +  P   RK+ +   P I+   +Q ++E  + + H V   + E SVV
Sbjct: 779 KEQSPNSTKETTPKKERKTATTTQPVISSRKEQKKSEEKNINDHCV---TTEQSVV 831


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)

Query: 450 SRFGHEQSRMLKDALNSLPNPGVYVD 475
           SRFG E++RM+     SL  PGV V+
Sbjct: 354 SRFGEEKARMI--TTMSLLLPGVAVN 377


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 201 NDPEINQETKQIENE 215
           ND  IN+E + IENE
Sbjct: 434 NDLSINEEKRTIENE 448


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)

Query: 450 SRFGHEQSRMLKDALNSLPNPGVYVD 475
           SRFG E++RM+     SL  PGV V+
Sbjct: 354 SRFGEEKARMI--TTMSLLLPGVAVN 377


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,162
Number of Sequences: 429
Number of extensions: 5150
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 536
length of database: 140,377
effective HSP length: 61
effective length of query: 475
effective length of database: 114,208
effective search space: 54248800
effective search space used: 54248800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)