GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004953-TA|BGIBMGA004953-PA|IPR007087|Zinc finger,
C2H2-type
         (174 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    29   0.033
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    27   0.10 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      27   0.13 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.71 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   2.9  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   5.0  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 0.033
 Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 123 LHSCVICHEIFTTESDLLDHTILLHASSQTDSGILEHPTEATKKGDITLT 172
           ++ C +CHE F ++      T+ LH  + +DS ++  P ++  + +I ++
Sbjct: 259 VYKCTLCHETFGSKK-----TMELHIKTHSDSSVVGSPRDSPIEPEIEIS 303



 Score = 21.0 bits (42), Expect = 6.6
 Identities = 6/19 (31%), Positives = 9/19 (47%)

Query: 124 HSCVICHEIFTTESDLLDH 142
           H C +C + F     L+ H
Sbjct: 176 HKCTVCSKTFIQSGQLVIH 194


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 27.1 bits (57), Expect = 0.10
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 124 HSCVICHEIFTTESDLLDHTILLHASSQTDSGI 156
           + CVIC  ++ + + L+ H    H S   D  I
Sbjct: 36  YRCVICERVYCSRNSLMTHIYTYHKSRPGDIDI 68


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 26.6 bits (56), Expect = 0.13
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 126 CVICHEIFTTESDLLDHTILLH 147
           C +CH++F T + L +H  + H
Sbjct: 404 CALCHKVFRTLNSLNNHKSIYH 425


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 0.71
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 27  NNETKTLEAPSIDTTDNQLTLESNVSGQYFNVESILVRESENLMEQATECYVV 79
           NN+T T E P I   DN +   S   G    V +   R  + L      C+ +
Sbjct: 695 NNQTSTREYPRIMDLDNVMCRTSGPRGVAI-VSASTARSEQFLCRYEAHCFAL 746


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 31  KTLEAPSIDTTDNQLTLESNVSGQY 55
           KTL+  S D   N    E+++ GQ+
Sbjct: 667 KTLKPGSADKARNDFLTEASIMGQF 691


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 81  DDNLFNFESTLLDENTVNQFLLPAKGSTEAN 111
           ++  F   +T LD   VN+ +   K  TE+N
Sbjct: 80  NEEKFRERTTKLDSEQVNRLVNNCKDITESN 110


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.129    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,540
Number of Sequences: 429
Number of extensions: 2016
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 174
length of database: 140,377
effective HSP length: 54
effective length of query: 120
effective length of database: 117,211
effective search space: 14065320
effective search space used: 14065320
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)