GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004952-TA|BGIBMGA004952-PA|IPR000832|GPCR, family 2,
secretin-like
         (748 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   3.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   6.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   6.9  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 9/75 (12%)

Query: 69  QDTPDFVFAEDPDEYCLGAMYKNGTDS-------SSGIIS-IALVCFEPSLKANDIETSG 120
           Q  PD+ +A   D   + + YK   D         SG+I+ I L+C  P L A D+ TS 
Sbjct: 109 QPYPDWSWANYKDCSGIVSAYKIAIDKFDRLWVLDSGLINNIQLMC-SPKLLAFDLNTSK 167

Query: 121 ILTLISVVFLLATFA 135
           +L  I +   +A  A
Sbjct: 168 LLKQIEIPHNIAVNA 182


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 62  NGNKVSTQDTPDFVFAEDPDEYCLGAMYKNGTDS-------SSGIISIALVCFEPSLKAN 114
           NG ++  Q  PD+ FA+  D   + + +K   D         SG+++       P L A 
Sbjct: 104 NGGRL-LQPYPDWSFAKYEDCSGIVSAHKIAIDEYERLWVLDSGLVNNTQPMCSPKLFAF 162

Query: 115 DIETSGILTLISVVFLLAT 133
           D+ TS +L  + +   +AT
Sbjct: 163 DLNTSQLLKQVEIPHDVAT 181


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 495 LCLIISQAAGLVRIFTEFSNHI 516
           +  II Q AGL+R  +E+ NH+
Sbjct: 417 IAFIILQYAGLLRNRSEYLNHL 438


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.141    0.451 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,669
Number of Sequences: 429
Number of extensions: 9240
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 4
length of query: 748
length of database: 140,377
effective HSP length: 63
effective length of query: 685
effective length of database: 113,350
effective search space: 77644750
effective search space used: 77644750
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 47 (23.0 bits)