GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004950-TA|BGIBMGA004950-PA|IPR000672|Tetrahydrofolate
dehydrogenase/cyclohydrolase, IPR000559|Formate-tetrahydrofolate
ligase, FTHFS
         (932 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   8.7  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   8.7  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 16/55 (29%), Positives = 21/55 (38%)

Query: 271 GVGPMTVAMLMRNTVQAARRQLDRLLAPSWPLKPLRLTPITPPPSDIVIARSQKP 325
           G G   V+    N+V   R  L R    ++ LKP       P P D+V      P
Sbjct: 31  GNGNAIVSNSASNSVHGHREGLGRRHRYNFQLKPYNPEHKPPGPKDLVYLEPSPP 85


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 16/55 (29%), Positives = 21/55 (38%)

Query: 271 GVGPMTVAMLMRNTVQAARRQLDRLLAPSWPLKPLRLTPITPPPSDIVIARSQKP 325
           G G   V+    N+V   R  L R    ++ LKP       P P D+V      P
Sbjct: 32  GNGNAIVSNSASNSVHGHREGLGRRHRYNFQLKPYNPEHKPPGPKDLVYLEPSPP 86


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,762
Number of Sequences: 429
Number of extensions: 9249
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 932
length of database: 140,377
effective HSP length: 64
effective length of query: 868
effective length of database: 112,921
effective search space: 98015428
effective search space used: 98015428
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)