GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004946-TA|BGIBMGA004946-PA|IPR000719|Protein kinase,
IPR002290|Serine/threonine protein kinase, IPR011009|Protein
kinase-like
         (161 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    39   2e-05
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   1.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   1.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.9  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 39.1 bits (87), Expect = 2e-05
 Identities = 30/138 (21%), Positives = 60/138 (43%), Gaps = 4/138 (2%)

Query: 2   DYDVNNYTVVGRIGEGAHGLVFKAK-HNTTGREVALKKILIKNL-EDGIPVHVMREIKAL 59
           D  + +   +  +G G  G V   +    + R  ALK++    + E     H+M E + +
Sbjct: 361 DLRLQDLRPLATLGVGGFGRVELVQIAGDSSRSFALKQMKKAQIVETRQQQHIMSEKRIM 420

Query: 60  QLLRCKYIIKLYDMFPRGMSLVLVLEYMYSG-LWEMLHQCEHELTIARVKTYAEMLLKGM 118
               C +++KL+  F     L +++E    G LW +L    H       + Y   +++  
Sbjct: 421 GEADCDFVVKLFKTFKDRKYLYMLMEACLGGELWTVLRDKGH-FDDGTTRFYTACVVEAF 479

Query: 119 RYMHAHYVMHRFLYTEKV 136
            Y+H+  +++R L  E +
Sbjct: 480 DYLHSRNIIYRDLKPENL 497


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 7/16 (43%), Positives = 14/16 (87%)

Query: 114 LLKGMRYMHAHYVMHR 129
           +L+G+RY+H+  ++HR
Sbjct: 706 VLEGIRYLHSQGLVHR 721


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 7/16 (43%), Positives = 14/16 (87%)

Query: 114 LLKGMRYMHAHYVMHR 129
           +L+G+RY+H+  ++HR
Sbjct: 744 VLEGIRYLHSQGLVHR 759


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/37 (21%), Positives = 20/37 (54%)

Query: 60  QLLRCKYIIKLYDMFPRGMSLVLVLEYMYSGLWEMLH 96
           ++++   ++K+Y   P     ++V E+  S  + +LH
Sbjct: 220 KVIKATKVLKMYACCPNDTYPMIVYEFSISRHYGILH 256


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.142    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,443
Number of Sequences: 429
Number of extensions: 1825
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 161
length of database: 140,377
effective HSP length: 53
effective length of query: 108
effective length of database: 117,640
effective search space: 12705120
effective search space used: 12705120
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 41 (20.6 bits)