GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004944-TA|BGIBMGA004944-PA|IPR011598|Helix-loop-helix
DNA-binding, IPR001092|Basic helix-loop-helix dimerisation region
bHLH, IPR002418|Transcription regulator Myc
         (753 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    45   2e-06
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      45   3e-06
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              29   0.14 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.7  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 45.2 bits (102), Expect = 2e-06
 Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 4/114 (3%)

Query: 625 RAHHNALERKRRDHIKDSFTSLRESVPALQNEKVASRAQILKKAAEYIQFMRRKNNSHQQ 684
           R  HN LE+ RR H+++    L+  VP        +   +L KA  +I+ +  +   H  
Sbjct: 50  RTTHNELEKNRRAHLRNCLEKLKVLVPLGPETSRHTTLGLLTKAKRFIKSLEERERKHAV 109

Query: 685 DIEDLKRQNNILEAPIRALEKARTTGNYVDAHELGLGIKSEGSSHDTDSSDGEG 738
             E L R+   L    R LE+          H L  G+    SS  T SS G G
Sbjct: 110 HKEQLSREQRFLR---RRLEQLTNQTGLHGLHGLH-GLHGLSSSAPTGSSCGPG 159


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 44.8 bits (101), Expect = 3e-06
 Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 4/96 (4%)

Query: 624 KRAHHNALERKRRDHIKDSFTSLRESVPALQNEKVASRAQILKKAAEYIQFMRRKNNSHQ 683
           +R   N  ER+R   + ++F +LR+ +P L ++K+ S+ Q LK A  YI F+ +  + + 
Sbjct: 254 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKL-SKIQTLKLATRYIDFLFQVLHCNM 312

Query: 684 QDIE--DLKRQNNILEAPIRALEKARTTGNYVDAHE 717
           ++ E  D   + N   A + A E   ++ +Y+ AHE
Sbjct: 313 ENTEGADDASERNPRSAVLAAREITSSSCSYM-AHE 347


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 29.1 bits (62), Expect = 0.14
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 141 HANFARCTARFSGAAGESLDAFLDAAEAYRDCSDISEENAIRGLSVLL 188
           HA    C AR    +  S D  + A  A    +D+++E AIRG S +L
Sbjct: 75  HAQVYSCLARSPAGSVHSRDVNVRAVVAQYYDTDVNKEYAIRGNSAIL 122


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 12  KAYTEEDIEKALQAIKNGMV--RNMIKIYFIATLT 44
           +AYTEE+++ AL+ I++G +  R    IY I   T
Sbjct: 589 RAYTEEELQAALRDIQSGKLGTRRAAVIYGIPRST 623


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,880
Number of Sequences: 429
Number of extensions: 8433
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 753
length of database: 140,377
effective HSP length: 63
effective length of query: 690
effective length of database: 113,350
effective search space: 78211500
effective search space used: 78211500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)