GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004940-TA|BGIBMGA004940-PA|undefined
         (450 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   5.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   6.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 5.2
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 6/41 (14%)

Query: 399 SEYRSPSPVPSTSKQEIKPEELSDATDSDRVKTDADTEELR 439
           S   SP+ +P  ++ EIK E +   T      T  DT E++
Sbjct: 123 SSQASPTSIPYATRAEIKTESIQPET------TKVDTREVQ 157


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 383 VSEVKVKTEPDVVPSTSEYRSPSPVPSTSKQEIKPEELSDATDSDRVKTDADTEELRR 440
           VS +  K+E   +  T++   PS V +     +K  ELS + D+   +   D++ + R
Sbjct: 398 VSALAGKSEYVDITVTTDASVPSLVSNVRITSVKSSELSISWDAPITEIGGDSDLVER 455


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,768
Number of Sequences: 429
Number of extensions: 3876
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 450
length of database: 140,377
effective HSP length: 60
effective length of query: 390
effective length of database: 114,637
effective search space: 44708430
effective search space used: 44708430
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)