GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004935-TA|BGIBMGA004935-PA|IPR001926|Pyridoxal-5'-
phosphate-dependent enzyme, beta subunit
         (348 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...   267   1e-73
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   3.9  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   9.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   9.1  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score =  267 bits (654), Expect = 1e-73
 Identities = 133/296 (44%), Positives = 195/296 (65%), Gaps = 6/296 (2%)

Query: 3   LQQYNNPCNPLAHYDGTAEEILWALDDAVDMVVIGAGTSGTISGVGHKIKERCPDCVIVG 62
           L QY NP NPLAHYD TA EI    +  +D +V GAGT GTISG+G K+KE  P+  I+ 
Sbjct: 179 LDQYTNPGNPLAHYDQTAIEIWKQCEGKIDYLVAGAGTGGTISGIGRKLKELSPNIKIIA 238

Query: 63  VDPYGSILAEPEVLNESDVQVYEVEGIGYDFLPGTLDRTVVDKWVKSDDQNSLEIARRLI 122
           VDP GSIL +P   ++++V  YEVEGIGYDF+P  LDR V+DKW+K++D  SL  AR LI
Sbjct: 239 VDPKGSIL-DPSSDSQNEVGFYEVEGIGYDFIPTVLDRNVIDKWIKTEDNESLNAARMLI 297

Query: 123 KDEGLLCGGSSGAAMWGAIQAAKSLKEGQKCVVLLPDSIRNYMTKFISDQWMEARNF-KP 181
           + EGLLCGGSSGAA+  A++ AK + E ++ V++LPD IRNY+TKF+S+ WME R F +P
Sbjct: 298 RQEGLLCGGSSGAALIAALKIAKDIPEEKRMVIILPDGIRNYLTKFVSEYWMETRGFLQP 357

Query: 182 LIKNDKLLWWDKHLTQDMVRPTKSISHYSTTA--YAMATLKENPTPLLNVTGDNGSLVGL 239
           + +N+   WW      ++    +S+   +T     AM  LK   + LL ++ DN  + G+
Sbjct: 358 VCQNEMNKWWWNMKISNLSFDKQSLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGV 417

Query: 240 LTADNVRKKLSNMLAKTSDPLDKFLVKKYYKVDLSNKPSLGLVSRMLDISPYVVVV 295
           ++ + +   + + + K +D +DK +VK+Y KV   +  +LG +SR+L+  PYV+++
Sbjct: 418 ISLNKLTSYVISGIVKCTDFVDKAMVKQYVKV--KHSATLGYISRVLEKEPYVIIL 471


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 226 LLNVTGDNGSLVGLLTADNVRKKLSNMLAKTSDPLDKFLVKKYYKVDLSNK 276
           +L   GD G+++  LT          +LA +S P  K L+KK Y + +  K
Sbjct: 2   VLRCIGDMGAVMTSLTLGPA----GQVLAGSSSPRPKPLLKKEYPLVMDTK 48


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 299 MNFWLKIKDRRPRFQSLKQSQSRKR 323
           M  W+ I+++ PRF+ +  S S  R
Sbjct: 362 MGPWISIQEQIPRFRHIGPSTSFPR 386


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 5/16 (31%), Positives = 11/16 (68%)

Query: 100 RTVVDKWVKSDDQNSL 115
           + ++D W+K   QN++
Sbjct: 337 KVIIDNWIKGTPQNNV 352


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,184
Number of Sequences: 429
Number of extensions: 3962
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 348
length of database: 140,377
effective HSP length: 58
effective length of query: 290
effective length of database: 115,495
effective search space: 33493550
effective search space used: 33493550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)