GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004933-TA|BGIBMGA004933-PA|IPR002075|Nuclear transport
factor 2
         (137 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   8.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 7/34 (20%), Positives = 19/34 (55%)

Query: 87   KLTYLIQACGDVTYQNEETKKPFQQTFLIVAVDG 120
            +L Y I + GD++ +++ +   +++      +DG
Sbjct: 1199 RLRYAIPSAGDISIESKSSPLVYKRNINTYTLDG 1232


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 61  LMDLPASNHTLKSLDAQPISDVLVANKLTYLIQACGDVTY 100
           +M++   N +  SL +   +DV VA  L  +    G  TY
Sbjct: 101 VMNIQKDNKSYLSLRSLLSADVAVATPLISMGALLGKTTY 140


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,257
Number of Sequences: 429
Number of extensions: 1411
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 137
length of database: 140,377
effective HSP length: 52
effective length of query: 85
effective length of database: 118,069
effective search space: 10035865
effective search space used: 10035865
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)