Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA004929-TA|BGIBMGA004929-PA|IPR010754|Optic atrophy 3
(260 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 27 0.17
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 27 0.17
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 27 0.17
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 27 0.17
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 2.8
AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein. 23 3.7
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 22 4.9
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 22 6.4
DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protei... 21 8.5
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 21 8.5
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 27.1 bits (57), Expect = 0.17
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 217 SSFFPKNNTEYEKERDEDKFTRNRREPAVLSGILHN-IENN 256
+S+ T E+ RD + R+ REP ++S +L+N I NN
Sbjct: 276 NSYRKYRETSKERSRDRTERERS-REPKIISSLLNNTIHNN 315
Score = 25.8 bits (54), Expect = 0.39
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 140 QLREMERLIHSIGGDQAPKYSPSSDKDSTNGRSPPDATLNNHVPEHINHNSPTL 193
+LR + R I +G +++ SP S S + L+N PE I N+ L
Sbjct: 65 ELRRI-REIEKLGSERSKSRSPDSRDRSNTSNTSKTVILSNKGPEGIQINATEL 117
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 27.1 bits (57), Expect = 0.17
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 217 SSFFPKNNTEYEKERDEDKFTRNRREPAVLSGILHN-IENN 256
+S+ T E+ RD + R+ REP ++S +L+N I NN
Sbjct: 287 NSYRKYRETSKERSRDRTERERS-REPKIISSLLNNTIHNN 326
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 27.1 bits (57), Expect = 0.17
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 217 SSFFPKNNTEYEKERDEDKFTRNRREPAVLSGILHN-IENN 256
+S+ T E+ RD + R+ REP ++S +L+N I NN
Sbjct: 287 NSYRKYRETSKERSRDRTERERS-REPKIISSLLNNTIHNN 326
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 27.1 bits (57), Expect = 0.17
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 217 SSFFPKNNTEYEKERDEDKFTRNRREPAVLSGILHN-IENN 256
+S+ T E+ RD + R+ REP ++S +L+N I NN
Sbjct: 276 NSYRKYRETSKERSRDRTERERS-REPKIISSLLNNTIHNN 315
Score = 25.4 bits (53), Expect = 0.52
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 140 QLREMERLIHSIGGDQAPKYSPSSDKDSTNGRSPPDATLNNHVPEHINHNSPTL 193
+LR + R I +G +++ SP S S + L+N PE I N+ L
Sbjct: 65 ELRRI-REIEKLGSERSKSRSPDSRDRSNTSNTSKTIILSNKGPEGIQINATEL 117
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.0 bits (47), Expect = 2.8
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 194 SPTPYPNKGLILQSLNYIQMDAYSSFFPKNNTEYEKERD 232
SP P P L S N Q+D YSS N E D
Sbjct: 651 SPFPLPPN---LASANISQLDPYSSLLSITNLAAEHSGD 686
>AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein.
Length = 226
Score = 22.6 bits (46), Expect = 3.7
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 203 LILQSLNYIQMDAYSSFFPKNNTEYEKERDEDKFTRNRREPA 244
L+ +N++QMD + + E+ E F R PA
Sbjct: 157 LVHNYMNFMQMDEFVVNLKSGSNTIERNSHESXFVVPTRVPA 198
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 22.2 bits (45), Expect = 4.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 133 TVQKQQTQLREMERLIHSIGG 153
T Q+Q Q M+R+I IGG
Sbjct: 1071 TNQQQSIQTSGMQRIIAQIGG 1091
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.8 bits (44), Expect = 6.4
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 198 YPNKGLILQSLNYIQMDAYSSFFPKNNTEYEKE 230
YPN + + NY + + K NT +E +
Sbjct: 438 YPNASVTPYNKNYTKFCSTEKRLTKQNTAFENQ 470
>DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protein
protein.
Length = 424
Score = 21.4 bits (43), Expect = 8.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 246 LSGILHNIENNFRLQ 260
+SG L++ E NFR+Q
Sbjct: 385 MSGTLNSNETNFRIQ 399
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 21.4 bits (43), Expect = 8.5
Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 182 VPEHINHNSPTLSPTPYPN 200
VP+H SP L PYPN
Sbjct: 217 VPKHSKTKSPKL--RPYPN 233
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.317 0.134 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,005
Number of Sequences: 429
Number of extensions: 4634
Number of successful extensions: 30
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 12
length of query: 260
length of database: 140,377
effective HSP length: 56
effective length of query: 204
effective length of database: 116,353
effective search space: 23736012
effective search space used: 23736012
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)
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