GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004926-TA|BGIBMGA004926-PA|IPR005078|Peptidase C54
         (363 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   5.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   9.5  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 10/28 (35%), Positives = 12/28 (42%)

Query: 123 LGKKPGDWYGPASVAHCLKSLIASASKE 150
           L K  G WY P+   HC     A   K+
Sbjct: 233 LCKGDGKWYLPSGGCHCKPGYQADVEKQ 260


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 12  IYGEGIEGFKSDFVSKIWMTYR 33
           I  +GI  + + FVS+ WM  R
Sbjct: 331 ILPDGIRNYLTKFVSEYWMETR 352


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 315 IFTLNNGSCDSLMDTPNARYS 335
           + TL+  S DS  D P  RY+
Sbjct: 284 VLTLSTISLDSRTDLPKVRYA 304


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,654
Number of Sequences: 429
Number of extensions: 4576
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 363
length of database: 140,377
effective HSP length: 59
effective length of query: 304
effective length of database: 115,066
effective search space: 34980064
effective search space used: 34980064
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 44 (21.8 bits)