GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004924-TA|BGIBMGA004924-PA|undefined
         (110 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    27   0.039
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    26   0.090
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   0.84 
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   4.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   7.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   7.8  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 27.5 bits (58), Expect = 0.039
 Identities = 15/54 (27%), Positives = 24/54 (44%)

Query: 32  ASKVVRVLTVLAYLLSVSMAAILLSVYYVCVWKSPELPPLNDTGKLNARRAPPP 85
           A + +R+L +   L  V +  +   V YV  W+   +P      +   RRA PP
Sbjct: 201 AGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYIPLYQQPERHYERRATPP 254


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 26.2 bits (55), Expect = 0.090
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 34  KVVRVLTVLAYLLSVSMAAILLSVYYVCVWKSPELPPLNDTGKLNARRAP-PPHHSII 90
           K + +   LA L+  S+   LL   + CV     +P LN T    + + P P ++S I
Sbjct: 587 KAMWLRRALASLMVFSLGLFLLLDMFNCVVVEETIPSLNSTNVTLSTKCPYPSYYSYI 644


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 0.84
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 26  NHKEKPASKVVRVLTVLAYLLSV 48
           N K+KP   ++ + T+L Y+  V
Sbjct: 313 NSKDKPEDVLIIIYTILTYMSGV 335


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 2  SVCGNNGHSEDKNATDDVIPSVHDNHK 28
          +V   NG+  +KN T D++ +V D+++
Sbjct: 71 NVVDENGNFNEKN-TRDIVQAVLDDNE 96


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 5/23 (21%), Positives = 16/23 (69%)

Query: 83  PPPHHSIIMERLQSSGKYSVRAL 105
           PP  ++ +++ L+ + +Y++R +
Sbjct: 961 PPLPYAALIDELKPATRYTIRVI 983


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 5/23 (21%), Positives = 16/23 (69%)

Query: 83  PPPHHSIIMERLQSSGKYSVRAL 105
           PP  ++ +++ L+ + +Y++R +
Sbjct: 957 PPLPYAALIDELKPATRYTIRVI 979


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,423
Number of Sequences: 429
Number of extensions: 1096
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 110
length of database: 140,377
effective HSP length: 50
effective length of query: 60
effective length of database: 118,927
effective search space:  7135620
effective search space used:  7135620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)