GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004923-TA|BGIBMGA004923-PA|IPR000873|AMP-dependent
synthetase and ligase
         (189 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    25   0.61 
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    25   0.61 
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    25   0.61 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   1.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   5.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.9  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 39  KGPLVMKGYMNNDQANEDIKDDEGFLKTGDIGYYDSDGCFYIVDRLKELIK 89
           K  L M GY N     +++  +  + K   +G+Y + G   I+D L+EL K
Sbjct: 156 KRVLSMDGYQNILDKKDELLGE--WEKRAPMGFYGTRGKKIILDALEELDK 204


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 39  KGPLVMKGYMNNDQANEDIKDDEGFLKTGDIGYYDSDGCFYIVDRLKELIK 89
           K  L M GY N     +++  +  + K   +G+Y + G   I+D L+EL K
Sbjct: 156 KRVLSMDGYQNILDKKDELLGE--WEKRAPMGFYGTRGKKIILDALEELDK 204


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 39  KGPLVMKGYMNNDQANEDIKDDEGFLKTGDIGYYDSDGCFYIVDRLKELIK 89
           K  L M GY N     +++  +  + K   +G+Y + G   I+D L+EL K
Sbjct: 156 KRVLSMDGYQNILDKKDELLGE--WEKRAPMGFYGTRGKKIILDALEELDK 204


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 32  ERGEVCVKGPLVMKGY 47
           ERGE+ VKG  +MK Y
Sbjct: 578 ERGEIEVKGKGIMKTY 593


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 14  SPKLQVVDINTRQTLGSYE 32
           SPKL   D+NT Q L   E
Sbjct: 156 SPKLFAFDLNTSQLLKQVE 174


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 3   LVVDIQILFNESPKLQVVDINTRQTLGSYE 32
           L+ +IQ++   SPKL   D+NT + L   E
Sbjct: 146 LINNIQLMC--SPKLLAFDLNTSKLLKQIE 173


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 14  SPKLQVVDINTRQTL 28
           SPKL V D+NT   L
Sbjct: 155 SPKLHVFDLNTSHQL 169


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 140 TERELLDFTNERLSPITRIRGGIFFVGEIPKNATGK 175
           TE ++++  + R+SP+  IR     V       TG+
Sbjct: 365 TEADIIELQDLRMSPLPSIRNRSGLVSGSSTPGTGR 400


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 119 PDELAGELHTASVVPKP 135
           P+ LAG   TA+  P P
Sbjct: 38  PEHLAGTSTTAAATPTP 54


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 97  PAMIERVLLQHSDVLECGVVGAPD 120
           PA  +RVLL  +D +    + +PD
Sbjct: 338 PAWCDRVLLNPTDKMLVQDISSPD 361


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.140    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,479
Number of Sequences: 429
Number of extensions: 2200
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 189
length of database: 140,377
effective HSP length: 54
effective length of query: 135
effective length of database: 117,211
effective search space: 15823485
effective search space used: 15823485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)