GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004918-TA|BGIBMGA004918-PA|IPR001005|Myb, DNA-binding
         (125 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.4  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   5.5  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 5/41 (12%)

Query: 37  TESKKCRNCDVNEFR----LQHNKNKIIK-MMEDADDLNKR 72
           TE+K C + D+ +++    L++ K K ++ ++ED   +N R
Sbjct: 187 TENKSCTDSDIEKYKMFCNLENVKLKELRIILEDIKHINTR 227


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 9/32 (28%), Positives = 11/32 (34%)

Query: 41  KCRNCDVNEFRLQHNKNKIIKMMEDADDLNKR 72
           KC  C   +F      N  +       DLN R
Sbjct: 89  KCIGCSAEKFECSKTSNPCLPHRNSDRDLNIR 120


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.126    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,937
Number of Sequences: 429
Number of extensions: 764
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 125
length of database: 140,377
effective HSP length: 51
effective length of query: 74
effective length of database: 118,498
effective search space:  8768852
effective search space used:  8768852
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)