GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004917-TA|BGIBMGA004917-PA|undefined
         (73 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   1.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   1.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    19   6.2  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              19   8.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   8.2  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
          protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 1.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 12 ISPTTRQWLGMEEKTSELSANYS 34
          ++ +T +WL  EEK  + S+N S
Sbjct: 69 VAISTGEWLLTEEKLPKTSSNAS 91


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
          D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 1.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)

Query: 20 LGMEEKTSELSANYSGTTYP 39
          LG EE+ ++L+ ++   +YP
Sbjct: 9  LGSEEEGNQLNRSFYSASYP 28


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 19.0 bits (37), Expect = 6.2
 Identities = 10/37 (27%), Positives = 14/37 (37%)

Query: 8   YPGMISPTTRQWLGMEEKTSELSANYSGTTYPHSAST 44
           Y    +P        ++ T   S  +  T YPH  ST
Sbjct: 247 YERRATPPQPDRTSKDQGTIGESEVFDTTRYPHGCST 283


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 6/9 (66%), Positives = 6/9 (66%)

Query: 64 QWPETEDSK 72
          QWPET   K
Sbjct: 62 QWPETRQLK 70


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 25  KTSELSANYSG 35
           +TSELSA + G
Sbjct: 474 QTSELSATFKG 484


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.308    0.123    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,614
Number of Sequences: 429
Number of extensions: 1110
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 73
length of database: 140,377
effective HSP length: 46
effective length of query: 27
effective length of database: 120,643
effective search space:  3257361
effective search space used:  3257361
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.0 bits)
S2: 36 (18.6 bits)