GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004912-TA|BGIBMGA004912-PA|IPR010625|CHCH
         (179 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   3.0  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   5.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.9  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   9.1  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   9.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.1  

>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 71  QLFKNMKKACLHEFKQYANCID-KSSGDYGFRHCRKTQAVLDCCMK 115
           +L KNM+K+CL +       +D    G++   H    Q    C MK
Sbjct: 31  KLAKNMRKSCLQKIAITEELVDGMRRGEFPDDH--DLQCYTTCIMK 74


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/22 (27%), Positives = 16/22 (72%)

Query: 74 KNMKKACLHEFKQYANCIDKSS 95
          +N++   ++ F+  A+C+D+S+
Sbjct: 18 QNLRARSVNIFQDIADCVDRSN 39


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 15  LTVPEVNLSTSTLMSAAPYLGKH 37
           + +P V L TST   +   L KH
Sbjct: 360 MEIPNVTLPTSTYSGSPTELPKH 382


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 95  SGDYGFRHCR 104
           S DYGF  CR
Sbjct: 288 SSDYGFTECR 297


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6
          variant 2 precursor protein.
          Length = 94

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 58 CLELGKRVTACTLQLFKNMKKACLHEFK 85
          C+++      C L   +N KK C+   K
Sbjct: 63 CIKICAPGCVCRLGYLRNKKKVCVPRSK 90


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6
          variant 1 precursor protein.
          Length = 92

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 58 CLELGKRVTACTLQLFKNMKKACLHEFK 85
          C+++      C L   +N KK C+   K
Sbjct: 63 CIKICAPGCVCRLGYLRNKKKVCVPRSK 90


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 16  TVPEVNLSTSTLMSAAPY 33
           T+P +N +  TL +  PY
Sbjct: 620 TIPSLNSTNVTLSTKCPY 637


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.135    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,275
Number of Sequences: 429
Number of extensions: 1621
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 179
length of database: 140,377
effective HSP length: 54
effective length of query: 125
effective length of database: 117,211
effective search space: 14651375
effective search space used: 14651375
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 41 (20.6 bits)