GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004909-TA|BGIBMGA004909-PA|IPR001108|Peptidase A22A,
presenilin, IPR006639|Peptidase A22, presenilin signal peptide
         (466 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    28   0.19 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    28   0.19 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    26   0.58 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.1  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 221 IAALMALVFIKYLPEWTTWAVLAVISIWDLVAVLTP 256
           IA +   +F  +L  WT +A +A+I ++    +LTP
Sbjct: 280 IAKVAFTIFFLFLLAWTPYATVALIGVYGNRELLTP 315


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 221 IAALMALVFIKYLPEWTTWAVLAVISIWDLVAVLTP 256
           IA +   +F  +L  WT +A +A+I ++    +LTP
Sbjct: 280 IAKVAFTIFFLFLLAWTPYATVALIGVYGNRELLTP 315


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 214 QQAYLIFIAALMALVFIKYLPEWTTWAVLAVISIWDLVAVLTP 256
           Q A +    A + + F+ Y+  WT + V+++I  +   A+LTP
Sbjct: 266 QSAEIRIAKAAITICFL-YVLSWTPYGVMSMIGAFGNKALLTP 307


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 124 ALANSMILLCVIALMTVLLIVLYKKKCYK 152
           A+   ++LL +I +MTVL++     +C K
Sbjct: 537 AIVAVVVLLVIIIIMTVLILRRASDECNK 565


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.139    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,028
Number of Sequences: 429
Number of extensions: 4011
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 466
length of database: 140,377
effective HSP length: 60
effective length of query: 406
effective length of database: 114,637
effective search space: 46542622
effective search space used: 46542622
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)