GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004908-TA|BGIBMGA004908-PA|IPR005937|26S proteasome
subunit P45, IPR003959|AAA ATPase, central region,
IPR003960|AAA-protein subdomain, IPR003593|AAA ATPase
         (406 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    27   0.29 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   8.2  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 27.1 bits (57), Expect = 0.29
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 87  AIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVG 127
           AIV  ++GS  +  I  +V +  LE  C+++  H V  ++G
Sbjct: 335 AIVLGAIGSIVFYIISRYVFRSALEDYCNIVATHLVCGILG 375


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 362 KAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTP 401
           K +C   G  AL+ER+ +   + F+    S+   K+ G P
Sbjct: 27  KKLCAVYGDEALKERQCQNWFDKFRSGDFSLKDEKRSGRP 66


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 370 LMALRERRMKVTNEDFKKSKESV 392
           L AL    MK T E+ KK+K+S+
Sbjct: 526 LNALPPSSMKETEEEKKKTKQSL 548


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.136    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,248
Number of Sequences: 429
Number of extensions: 4882
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 3
length of query: 406
length of database: 140,377
effective HSP length: 59
effective length of query: 347
effective length of database: 115,066
effective search space: 39927902
effective search space used: 39927902
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)