GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004907-TA|BGIBMGA004907-PA|IPR001926|Pyridoxal-5'-
phosphate-dependent enzyme, beta subunit
         (724 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    40   7e-05
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    32   0.019
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   2.9  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 39.9 bits (89), Expect = 7e-05
 Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 12/183 (6%)

Query: 92  IKSERQNLTYINGYDHP-HVIAASGSIALEILEQLP-QTDXXXXXXXXXXXXXXXXXXXK 149
           ++ E  N   ++ Y +P + +A     A+EI +Q   + D                   K
Sbjct: 169 LQKEIPNSIILDQYTNPGNPLAHYDQTAIEIWKQCEGKIDYLVAGAGTGGTISGIGRKLK 228

Query: 150 KLKPEIKIYGIEPKKCCSFFKAMENDNPFQTVVGATVAELLAVPKAGFNAFYTARSLIDK 209
           +L P IKI  ++PK        ++  +  Q  VG    E +      F      R++IDK
Sbjct: 229 ELSPNIKIIAVDPKG-----SILDPSSDSQNEVGFYEVEGIGYD---FIPTVLDRNVIDK 280

Query: 210 MVLVEDNWISRAILHLTEEEKMVTEGAGATALSAFFATPIILPELKGKTVVCVVSGGNTD 269
            +  EDN    A   L  +E ++  G+   AL A       +PE   K +V ++  G  +
Sbjct: 281 WIKTEDNESLNAARMLIRQEGLLCGGSSGAALIAALKIAKDIPE--EKRMVIILPDGIRN 338

Query: 270 YFT 272
           Y T
Sbjct: 339 YLT 341


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 31.9 bits (69), Expect = 0.019
 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 2/37 (5%)

Query: 289 KMREDFDEFCDPENPRPIKYDEVKDALERLSPFITKT 325
           K+RE+ + FC P+N + +KYD++K+ +E L     +T
Sbjct: 329 KLREEINTFC-PKNNKELKYDDIKE-MEYLDKVFKET 363


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 655 YNVVHQFQDRIWVEGSDYTIEIKLVCETRNLEHALELKRIIER 697
           Y +     DR+WV  S     I+L+C  + L   L   +++++
Sbjct: 129 YKIAIDKFDRLWVLDSGLINNIQLMCSPKLLAFDLNTSKLLKQ 171


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,244
Number of Sequences: 429
Number of extensions: 8059
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 3
length of query: 724
length of database: 140,377
effective HSP length: 63
effective length of query: 661
effective length of database: 113,350
effective search space: 74924350
effective search space used: 74924350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)