GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004906-TA|BGIBMGA004906-PA|IPR001926|Pyridoxal-5'-
phosphate-dependent enzyme, beta subunit, IPR002912|Amino acid-binding
ACT, IPR005789|Threonine dehydratase II
         (829 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    43   9e-06
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    25   1.9  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 43.2 bits (97), Expect = 9e-06
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 9/123 (7%)

Query: 439 DIYFKQEFLQYTGSFKERGVRNALISLSDEQK-KNG--VIAASTGNHGAALSYHSTQLGI 495
           +IY K EFL   GS K+R     +    D+   K G  +I  ++GN G  L+  +   G 
Sbjct: 63  EIYAKCEFLNPGGSVKDRIAYRMIQDAEDKGLLKPGCTIIEPTSGNTGIGLAMAAAVRGY 122

Query: 496 PCIVVVPIHTALNKVNKCEQLGAKVFKHGIDMS--AAKLH---AMSLGKE-KKMIYINGY 549
            CI+V+P   +  K++    LGAK+ +   + S  + + H   A  L KE    I ++ Y
Sbjct: 123 KCIIVMPEKMSDEKISTLYALGAKIIRTPTEASWHSPEAHISVAQKLQKEIPNSIILDQY 182

Query: 550 DHP 552
            +P
Sbjct: 183 TNP 185



 Score = 31.5 bits (68), Expect = 0.029
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 9/123 (7%)

Query: 32  IQSEIIKTPCVK-SHMSSIFGM--DIYLKNDFLQHTGSFKERGARNALILLPEEAKTR-- 86
           I + I +TP +K +++   +G+  +IY K +FL   GS K+R A   +    ++   +  
Sbjct: 39  ILTAIGQTPLIKLNNIPKSYGIKCEIYAKCEFLNPGGSVKDRIAYRMIQDAEDKGLLKPG 98

Query: 87  -GVISASLGNHSQALSYHAHKLNIPTTVVMPNVAPIMKIQKCQSYGANVIVHGHDMKEAK 145
             +I  + GN    L+  A        +VMP      KI    + GA +I       EA 
Sbjct: 99  CTIIEPTSGNTGIGLAMAAAVRGYKCIIVMPEKMSDEKISTLYALGAKII---RTPTEAS 155

Query: 146 YHA 148
           +H+
Sbjct: 156 WHS 158


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 416 WDFAGEFVGRRGSRAHM 432
           W+F G+FVG RG ++ +
Sbjct: 319 WEFRGKFVGVRGKKSSL 335


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,891
Number of Sequences: 429
Number of extensions: 7678
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 3
length of query: 829
length of database: 140,377
effective HSP length: 63
effective length of query: 766
effective length of database: 113,350
effective search space: 86826100
effective search space used: 86826100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)