GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004904-TA|BGIBMGA004904-PA|IPR011876|Isopentenyl-
diphosphate delta-isomerase, type 1, IPR000086|NUDIX hydrolase,
IPR002667|Isopentenyl-diphosphate delta-isomerase
         (251 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   4.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   8.1  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 150 LFTFMTRVHYHDPGDGVWGE 169
           LF+F+  + Y  P   +WG+
Sbjct: 150 LFSFLNTIVYCVPAGWIWGD 169


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 5/14 (35%), Positives = 10/14 (71%)

Query: 218 NMIRRHRLKLWWDN 231
           N+++  ++  WWDN
Sbjct: 395 NLVKGTKIDNWWDN 408


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.139    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,491
Number of Sequences: 429
Number of extensions: 3144
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 251
length of database: 140,377
effective HSP length: 56
effective length of query: 195
effective length of database: 116,353
effective search space: 22688835
effective search space used: 22688835
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)