GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004903-TA|BGIBMGA004903-PA|undefined
         (627 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   1.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   7.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   9.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   9.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 119 SLPRKFFRS--PTTANEVKCSGTASLKSISVVDSYIKSINTRAIYNVT 164
           S P  FF S  PT+      +G + L     ++ YI  +N  A  N+T
Sbjct: 94  SSPSSFFSSVSPTSLGSENYTGISDLFVFDDLNDYINRLNYSAFVNLT 141


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 196 SFANNKIESLRYKGVAVQCTSAFFTENTFRDVL 228
           S  N  +E LR+    +    A   +N F+D++
Sbjct: 805 SINNQGLECLRFLNEVISDFDAILDQNKFKDII 837


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
          releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 48 KDFYTDDIKSLTVQNCKDVKVVLDC 72
          KDFY  D K+  +      K+V DC
Sbjct: 46 KDFYRQDTKNNLLNAYVRFKLVTDC 70


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 308 YASCKTAGASVTYENNKID 326
           YASCK   A+V ++ + +D
Sbjct: 138 YASCKLQAAAVDHQGSVLD 156


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,009
Number of Sequences: 429
Number of extensions: 6587
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 4
length of query: 627
length of database: 140,377
effective HSP length: 62
effective length of query: 565
effective length of database: 113,779
effective search space: 64285135
effective search space used: 64285135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)