GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004902-TA|BGIBMGA004902-PA|IPR001484|Pyrokinin
         (700 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    31   0.032
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.52 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   4.9  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 31.1 bits (67), Expect = 0.032
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 473 HNYLPEGWEEKLDSLIDDAYTYGREGISTTVKNILKEGDPEKVSRVEQQVLEIW-DRVYQ 531
           H  +PE +  KLDSL+  + T+      T +K+I ++ D       + Q LE W DR+Y+
Sbjct: 264 HEPIPEAYFPKLDSLV-ASRTWPFRPSGTVLKDINRQVDE---LNFDIQDLERWRDRIYE 319

Query: 532 SWASGHFATAVGPQVDST 549
           +  +G      G ++  T
Sbjct: 320 AIHTGSVINTRGERIQLT 337


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 0.52
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 242 DKETPSPGTPETLPKSGSWTSNEPSQCPPRPPKILYKTRTLSALP 286
           D     P  P T  + G+  + E  + PP PPK + K  ++  LP
Sbjct: 613 DTNQSCPSPPVTTKRDGTQETEE--RLPPLPPKRIRKMPSMPLLP 655


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 213 NSHREKETNTEDSKSDSAQISASETEGTP 241
           N  +EK+ N E+ K   +   AS T  TP
Sbjct: 6   NMDQEKKNNVENLKGGGSTTPASPTLSTP 34


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,570
Number of Sequences: 429
Number of extensions: 8916
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 3
length of query: 700
length of database: 140,377
effective HSP length: 62
effective length of query: 638
effective length of database: 113,779
effective search space: 72591002
effective search space used: 72591002
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)