GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004901-TA|BGIBMGA004901-PA|undefined
         (119 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   2.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   2.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   2.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   2.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   2.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   6.7  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    20   8.8  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    20   8.8  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 17  IAESKVIKTKEFSLPPEGLTVEISIRTKSASHPI---STVKVDIDEQSKKVT 65
           IA +KVI  K F   P G+T  I      A +        KV ID  +K  T
Sbjct: 251 IAWTKVIYVKRFFGLPVGVTAAIPTSENPADYRYFCPDGSKVPIDANTKPCT 302


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 17  IAESKVIKTKEFSLPPEGLTVEISIRTKSASHPI---STVKVDIDEQSKKVT 65
           IA +KVI  K F   P G+T  I      A +        KV ID  +K  T
Sbjct: 251 IAWTKVIYVKRFFGLPVGVTAAIPTSENPADYRYFCPDGSKVPIDANTKPCT 302


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 17  IAESKVIKTKEFSLPPEGLTVEISIRTKSASHPI---STVKVDIDEQSKKVT 65
           IA +KVI  K F   P G+T  I      A +        KV ID  +K  T
Sbjct: 251 IAWTKVIYVKRFFGLPVGVTAAIPTSENPADYRYFCPDGSKVPIDANTKPCT 302


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 23  IKTKEFSLPPEGLTVEISIRTKS 45
           I  K    PPE ++  +++ TKS
Sbjct: 90  ITLKNAGTPPEAVSYNVAVPTKS 112


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 23  IKTKEFSLPPEGLTVEISIRTKS 45
           I  K    PPE ++  +++ TKS
Sbjct: 90  ITLKNAGTPPEAVSYNVAVPTKS 112


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 78  VRKHKAKTEATILENRGGFP 97
           +R HK +++   + +R GFP
Sbjct: 352 IRVHKTQSQTIDIYSRIGFP 371


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 83  AKTEATILENRGGFPQGNCPDMWEWNS 109
           A T A +   + GF   +   M+E NS
Sbjct: 19  ADTVAILCSQKAGFDLSDLKSMYESNS 45


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 83  AKTEATILENRGGFPQGNCPDMWEWNS 109
           A T A +   + GF   +   M+E NS
Sbjct: 19  ADTVAILCSQKAGFDLSDLKSMYEANS 45


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.129    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,167
Number of Sequences: 429
Number of extensions: 946
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 119
length of database: 140,377
effective HSP length: 51
effective length of query: 68
effective length of database: 118,498
effective search space:  8057864
effective search space used:  8057864
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)
S2: 39 (19.8 bits)