GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004898-TA|BGIBMGA004898-PA|IPR003674|Oligosaccharyl
transferase, STT3 subunit
         (785 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   3.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   3.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   3.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   5.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   9.6  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   9.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   9.6  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 206 ICTALS-YFYMVSAWGGYVFIINLIPLHVFVLLIMGRFSQRLFVSYS 251
           IC A +   + + AW  ++     +PL   VLL+   +++ L  S+S
Sbjct: 234 ICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFS 280


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 589 SNESAAYSIMTMLDVDYVLVIFGGAIGYSGDDINK 623
           +N +A  +++ +  V  VL+IF G+I +S   +NK
Sbjct: 5   NNIAAFQNVVLVKKVKIVLLIFYGSIMFSMTQVNK 39


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 206 ICTALS-YFYMVSAWGGYVFIINLIPLHVFVLLIMGRFSQRLFVSYS 251
           IC A +   + + AW  ++     +PL   VLL+   +++ L  S+S
Sbjct: 234 ICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFS 280


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 564 GNRTTLVDNNTWNNSHIALVGKAMASNES 592
           GN + L  NNT NNS + +   ++ S  S
Sbjct: 721 GNVSYLTTNNTSNNSQLQIPRASLVSTTS 749


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 89  PLGRIVGGTVYPGLMIT 105
           P+GR+  G + PG+++T
Sbjct: 263 PVGRVETGILKPGMLVT 279


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 89  PLGRIVGGTVYPGLMIT 105
           P+GR+  G + PG+++T
Sbjct: 206 PVGRVETGVLKPGMVVT 222


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 89  PLGRIVGGTVYPGLMIT 105
           P+GR+  G + PG+++T
Sbjct: 263 PVGRVETGVLKPGMVVT 279


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.139    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,470
Number of Sequences: 429
Number of extensions: 9789
Number of successful extensions: 44
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 7
length of query: 785
length of database: 140,377
effective HSP length: 63
effective length of query: 722
effective length of database: 113,350
effective search space: 81838700
effective search space used: 81838700
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 47 (23.0 bits)