GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004896-TA|BGIBMGA004896-PA|IPR008936|Rho GTPase
activation protein, IPR000198|RhoGAP
         (847 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    29   0.12 
AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex det...    27   0.48 
AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex det...    27   0.48 
AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex det...    27   0.48 
AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex det...    27   0.48 
AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex det...    27   0.48 
AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex det...    27   0.48 
AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex det...    27   0.48 
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    27   0.48 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   2.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   5.9  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 29.5 bits (63), Expect = 0.12
 Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 310 KTRKDITNGLPQKELAFTPMKMGIERKRLRLSLMDARSTPIINSDFSSHK--NSETSISS 367
           K+ + +T G+  ++L     ++   +++ + +LM   +TP++ S F SH   +S  +IS+
Sbjct: 493 KSPRTLTLGIFAEKLRLETKELFSSQQKTKNNLMKLETTPVLPSRFQSHPSIDSANTISN 552

Query: 368 EDLLTSTEHLFS 379
             L    E  F+
Sbjct: 553 SSLQDYDETEFN 564


>AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 0.48
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 567 LRKRTSLAPDYNREKPVSKIQARRSLNLTSNNSFENTLSETSLNNSHDSSGKSNS 621
           LR+R        RE+   +++ +  L      + E  LS+ S + S +S G+SN+
Sbjct: 36  LRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSKRSKSRSPESRGRSNA 90


>AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 0.48
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 567 LRKRTSLAPDYNREKPVSKIQARRSLNLTSNNSFENTLSETSLNNSHDSSGKSNS 621
           LR+R        RE+   +++ +  L      + E  LS+ S + S +S G+SN+
Sbjct: 36  LRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSKRSKSRSPESRGRSNA 90


>AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 0.48
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 567 LRKRTSLAPDYNREKPVSKIQARRSLNLTSNNSFENTLSETSLNNSHDSSGKSNS 621
           LR+R        RE+   +++ +  L      + E  LS+ S + S +S G+SN+
Sbjct: 36  LRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSKRSKSRSPESRGRSNA 90


>AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 0.48
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 567 LRKRTSLAPDYNREKPVSKIQARRSLNLTSNNSFENTLSETSLNNSHDSSGKSNS 621
           LR+R        RE+   +++ +  L      + E  LS+ S + S +S G+SN+
Sbjct: 36  LRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSKRSKSRSPESRGRSNA 90


>AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 0.48
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 567 LRKRTSLAPDYNREKPVSKIQARRSLNLTSNNSFENTLSETSLNNSHDSSGKSNS 621
           LR+R        RE+   +++ +  L      + E  LS+ S + S +S G+SN+
Sbjct: 36  LRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSKRSKSRSPESRGRSNA 90


>AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 0.48
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 567 LRKRTSLAPDYNREKPVSKIQARRSLNLTSNNSFENTLSETSLNNSHDSSGKSNS 621
           LR+R        RE+   +++ +  L      + E  LS+ S + S +S G+SN+
Sbjct: 36  LRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSKRSKSRSPESRGRSNA 90


>AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 0.48
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 567 LRKRTSLAPDYNREKPVSKIQARRSLNLTSNNSFENTLSETSLNNSHDSSGKSNS 621
           LR+R        RE+   +++ +  L      + E  LS+ S + S +S G+SN+
Sbjct: 36  LRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSKRSKSRSPESRGRSNA 90


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 0.48
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 567 LRKRTSLAPDYNREKPVSKIQARRSLNLTSNNSFENTLSETSLNNSHDSSGKSNS 621
           LR+R        RE+   +++ +  L      + E  LS+ S + S +S G+SN+
Sbjct: 36  LRRRREWMIQQEREREHERLKKKMILEYELRRAREKKLSKRSKSRSPESRGRSNA 90


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 347  STPIINSDFSSHKNSETSISSEDLLTSTE 375
            +TPI+++ F   K S+   S+ED+L + +
Sbjct: 1400 NTPIMDAHFKDVKLSDFGFSTEDILDTAD 1428


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 590 RSLNLTSNNSFENTLSETSLNNSHDSSGKSNSLEQRPCYQN 630
           R+ +  +NN  +N  +  + N+++  + K N+  Q+   QN
Sbjct: 410 RNTHCVNNNQNDNIQNTNNQNDNNQKNNKKNANNQKNNNQN 450


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.127    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,802
Number of Sequences: 429
Number of extensions: 8287
Number of successful extensions: 28
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 11
length of query: 847
length of database: 140,377
effective HSP length: 64
effective length of query: 783
effective length of database: 112,921
effective search space: 88417143
effective search space used: 88417143
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 48 (23.4 bits)