GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004895-TA|BGIBMGA004895-PA|IPR011598|Helix-loop-helix
DNA-binding, IPR001092|Basic helix-loop-helix dimerisation region bHLH
         (162 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      46   2e-07
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   2.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.1  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 46.0 bits (104), Expect = 2e-07
 Identities = 22/43 (51%), Positives = 32/43 (74%), Gaps = 1/43 (2%)

Query: 94  NLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMCELLH 136
           +LNEAF  LR+ +PT   +K LS+I+TL+LA  YI F+ ++LH
Sbjct: 268 SLNEAFAALRKIIPTLPSDK-LSKIQTLKLATRYIDFLFQVLH 309


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 43  PADLVFMLVWSAAGCGRSVARATPSNKK 70
           P +L+   V +  GC   V  +TP NKK
Sbjct: 914 PGELLSSCVSNDGGCSSLVDVSTPVNKK 941


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 135 LHGSPQPHHGHSA 147
           +H +P  HH H+A
Sbjct: 426 IHATPHHHHSHAA 438


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 32  PVPYPDILAFPPADLVFMLVW 52
           PV YP I++   A L+   VW
Sbjct: 170 PVSYPQIMSPRRARLLVATVW 190


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,890
Number of Sequences: 429
Number of extensions: 2077
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 162
length of database: 140,377
effective HSP length: 53
effective length of query: 109
effective length of database: 117,640
effective search space: 12822760
effective search space used: 12822760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)