GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004890-TA|BGIBMGA004890-PA|IPR008946|Nuclear receptor,
ligand-binding, IPR000536|Nuclear hormone receptor, ligand-binding
         (265 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    64   9e-13
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    64   9e-13
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    38   9e-05
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    31   0.011

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 64.5 bits (150), Expect = 9e-13
 Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 4/139 (2%)

Query: 77  DRELVEIIGWAKQIPGFTDLQLNDQMRLLQSTWAEMLSLMVAYRSMSSGANLKLRFASDL 136
           +++L +++ WAK IP FT L L DQ+ LL++ W E+L    ++RS+     + L  A+ +
Sbjct: 239 NKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVL--ATGI 296

Query: 137 TLDEQEARDIGATDLFLQV-SGVVRRLERAGAVREECVLLKALVLANSEAR-LDEHLTLR 194
           T+    A+  G   +F +V S +V ++      R E   L++++L N E R L     + 
Sbjct: 297 TVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVT 356

Query: 195 RFREQILQALNEAVAVLRP 213
             RE+I  AL     V  P
Sbjct: 357 LLREKIYGALEGYCRVAWP 375


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 64.5 bits (150), Expect = 9e-13
 Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 4/139 (2%)

Query: 77  DRELVEIIGWAKQIPGFTDLQLNDQMRLLQSTWAEMLSLMVAYRSMSSGANLKLRFASDL 136
           +++L +++ WAK IP FT L L DQ+ LL++ W E+L    ++RS+     + L  A+ +
Sbjct: 239 NKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVL--ATGI 296

Query: 137 TLDEQEARDIGATDLFLQV-SGVVRRLERAGAVREECVLLKALVLANSEAR-LDEHLTLR 194
           T+    A+  G   +F +V S +V ++      R E   L++++L N E R L     + 
Sbjct: 297 TVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVT 356

Query: 195 RFREQILQALNEAVAVLRP 213
             RE+I  AL     V  P
Sbjct: 357 LLREKIYGALEGYCRVAWP 375


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 37.9 bits (84), Expect = 9e-05
 Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 2/126 (1%)

Query: 83  IIGWAKQIPGFTDLQLNDQMRLLQSTWAEMLSLMVAYRSMSSGANLKLRFASDLTLDEQE 142
           I+ ++K++PGF +L   DQ+ LL++  +E++ L +A +      ++        T D   
Sbjct: 389 IVEFSKRLPGFDELMREDQIALLKACSSEVMMLRMARKYDVQTDSIIFANNQPYTKDSYT 448

Query: 143 ARDIGATDLFLQVSGVVRRLERAGAVREECVLLKALVLANSEARLDEHLTLRRFREQILQ 202
              +G T     +    R++        E  LL A+V+ +    L E   + + +E  L+
Sbjct: 449 VAGMGET--IEDLLHFCRQMYAMKVNNAEYALLTAIVIFSERPNLLEGWKVEKIQEIYLE 506

Query: 203 ALNEAV 208
           AL   V
Sbjct: 507 ALRAYV 512


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 31.1 bits (67), Expect = 0.011
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 49  PEPFACSAAPPGVTEPAARTLALLADLYDR---ELVEIIGWAKQIPGFTDLQLNDQMRLL 105
           P   AC   P    +P      LL D   R    +  ++ +AK+IPGF+ L  +DQ+ LL
Sbjct: 214 PPTLACPLNPN--PQPLTGQQELLQDFSKRFSPAIRGVVEFAKRIPGFSLLAQDDQVTLL 271

Query: 106 QSTWAEMLSLMVA 118
           ++   E+L + +A
Sbjct: 272 KAGVFEVLLVRLA 284


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.134    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,720
Number of Sequences: 429
Number of extensions: 1715
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 265
length of database: 140,377
effective HSP length: 57
effective length of query: 208
effective length of database: 115,924
effective search space: 24112192
effective search space used: 24112192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 43 (21.4 bits)