GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004889-TA|BGIBMGA004889-PA|IPR002524|Cation efflux
protein
         (341 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    26   0.54 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   6.7  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 70  FHMFFDCTGLVAGLAASLVSKWRSNERFSYGYARAEVLAGFVN-GLFLLFIAFFIMSEAV 128
           F++  D   L+ G+    +   R+N+R  Y ++ A  +  +VN  +   +  F   SEA 
Sbjct: 235 FNIKGDTFDLMDGILGLALGPIRNNDRILYFHSLASRVESWVNTSVIRNYTLFNENSEAA 294

Query: 129 ERAIEPPEVKHERLLVVSVL 148
            R+  P  ++     V  V+
Sbjct: 295 ARSFVPFSIERSSQSVAEVM 314


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 206 VLADTLGSVGVIVSAILMQTFGWMRADPICSMAIA-LLIAASVIP 249
           VLA  LG+  VI+S    +    ++   I S+A+A L +A  V+P
Sbjct: 47  VLATVLGNALVILSVFTYRPLRIVQNFFIVSLAVADLAVAILVMP 91


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.140    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,047
Number of Sequences: 429
Number of extensions: 2559
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 2
length of query: 341
length of database: 140,377
effective HSP length: 58
effective length of query: 283
effective length of database: 115,495
effective search space: 32685085
effective search space used: 32685085
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 44 (21.8 bits)