GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004884-TA|BGIBMGA004884-PA|IPR007992|CybS
         (130 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   0.83 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   3.3  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    20   7.7  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 0.83
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 4   IRSFRTSCVRRSAEKVEDHSRLWVIERVVSAALVPLIPLALMMP 47
           +RS + SC+ R A + +    L V+     A  +P   L L  P
Sbjct: 287 VRSHQQSCINRVARETKTAGTLAVVVGGFVACWLPFFILYLATP 330


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 14/66 (21%), Positives = 33/66 (50%)

Query: 33  SAALVPLIPLALMMPNKLFDSLLAILITAHSFWGLEAIAVDYVRASIFGPILPKIAIGLV 92
           SAA +P+    L   NK+   +   ++   +   ++  A+    A+IF   +  I++G+ 
Sbjct: 363 SAATLPITFRCLEENNKIDSRVTRFVVAVGATVNMDGTALYEAVAAIFIAQMNGISLGIG 422

Query: 93  YLISIA 98
            +I+++
Sbjct: 423 EVITVS 428


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/23 (26%), Positives = 16/23 (69%)

Query: 85  PKIAIGLVYLISIATLGGLFYII 107
           P++ +G++ ++  A + GL+ +I
Sbjct: 126 PRLFVGMILILIFAEVLGLYGLI 148


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.329    0.141    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,455
Number of Sequences: 429
Number of extensions: 788
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 130
length of database: 140,377
effective HSP length: 51
effective length of query: 79
effective length of database: 118,498
effective search space:  9361342
effective search space used:  9361342
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 40 (20.2 bits)