GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004883-TA|BGIBMGA004883-PA|undefined
         (99 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   2.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    20   4.9  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    19   8.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    19   8.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 51  TCDGTSAAFTLHHQRIKNFGYHNS 74
           TC G  A+ T +H      G+H S
Sbjct: 499 TCSGEVASLTEYHHVAPPSGHHAS 522


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 21  NNIRTVCLPS-KYHPLGGRYSLHRISIPKLVTCDGTS 56
           NN+R+VC P      L     L ++ IP  +  + T+
Sbjct: 142 NNVRSVCPPQLLVFDLNTSQLLKQVKIPHDIAVNTTT 178


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
          protein.
          Length = 81

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 22 NIRTVCLPSKYHPLGGRYS 40
          +IRT  LP K H  G  +S
Sbjct: 35 HIRTHTLPCKCHLCGKAFS 53


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 15  YIQVPNNNIRTVCLPSKYHPLGGRYSLHR 43
           Y     NN     + +KYH  GG  ++ R
Sbjct: 188 YYLKSENNTELSRVGTKYHRSGGLMNVER 216


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,896
Number of Sequences: 429
Number of extensions: 1144
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 99
length of database: 140,377
effective HSP length: 49
effective length of query: 50
effective length of database: 119,356
effective search space:  5967800
effective search space used:  5967800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.5 bits)
S2: 38 (19.4 bits)