GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004880-TA|BGIBMGA004880-PA|undefined
         (95 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.21 
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    24   0.37 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   3.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   4.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   6.0  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    19   7.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    19   7.9  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    19   7.9  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 0.21
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 65  LEEYVKNSINYQIGKLIKAVNNATVYLDSLS 95
           L  + KN+    I KL+   NNA +Y  S++
Sbjct: 506 LINFSKNNTIVDISKLVNKRNNAKIYTSSVN 536


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.8 bits (49), Expect = 0.37
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 43  KILAKLLDTFSCNDCGKINKYNLEEYVKNSI 73
           KI++ L + +  ++    N YN + Y KN I
Sbjct: 80  KIISSLSNNYKYSNYNNYNNYNKKLYYKNYI 110


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 72  SINYQIGKLIKAVNNATVYLDSL 94
           S+N+ IG+L   V N T   D L
Sbjct: 519 SVNWTIGQLEAEVINCTTGKDEL 541


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 18  TAVADSLYKKAKRITPKVIHHNDPEKILAKLLDTFSCNDC 57
           T +A S Y  A +I     HH  P +     ++T   N C
Sbjct: 446 TPLAHSSYPAAIQIGHTPHHHPHPPETPGPQVETILQNAC 485


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
          protein.
          Length = 500

 Score = 19.8 bits (39), Expect = 6.0
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 50 DTFSCNDCGK 59
          D + CN CGK
Sbjct: 90 DPYRCNICGK 99


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 47  KLLDTFSCNDCGKINKYNLEEYVKNSINYQI 77
           K++ + S N    I+ YN +      + Y I
Sbjct: 80  KIISSLSNNYISNISNYNNDNNYNKKLYYNI 110


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 43  KILAKLLDTFSCNDCGKINKYNLEEY 68
           KI++ L + +  ++    N YN   Y
Sbjct: 313 KIISSLSNNYKYSNYNNYNNYNNNNY 338


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 47  KLLDTFSCNDCGKINKYNLEEYVKNSINY 75
           K++ + S       N YN   Y  N  NY
Sbjct: 313 KIISSLSNKTIHNNNNYNNNNYNNNYNNY 341


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,288
Number of Sequences: 429
Number of extensions: 1132
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 95
length of database: 140,377
effective HSP length: 49
effective length of query: 46
effective length of database: 119,356
effective search space:  5490376
effective search space used:  5490376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)