GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004879-TA|BGIBMGA004879-PA|IPR000330|SNF2-related,
IPR001650|Helicase, C-terminal, IPR014021|Helicase superfamily 1 and 2
ATP-binding, IPR014001|DEAD-like helicases, N-terminal
         (1394 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex det...    27   1.1  
AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex det...    26   1.9  
AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex det...    26   1.9  
AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex det...    26   1.9  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    26   1.9  
AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex det...    25   3.3  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    25   3.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    25   4.3  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    25   4.3  
AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex det...    25   4.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   5.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   5.7  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    24   10.0 

>AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 10/130 (7%)

Query: 83  MLPRRPQSIKKPTDQTNRVQGLKNKRMMFDSDLDNSITVEHNRHRKQMCLKDTPIKVEDI 142
           ML RR     KP  +   ++ + NK         N IT EH R    + ++ +  + +  
Sbjct: 158 MLKRRTGEGSKPIFEREEIKNILNKT--------NEIT-EH-RTVLAVNIEKSENETKTC 207

Query: 143 KRKSLLDDSMRDASGYVSNDNSDGDSAEKEDSSDETKYDSDGDEPVSRLDIEGHKSNSEN 202
           K+ ++  +S+R  S      +S     E     D   Y +DG+   SR     +K +   
Sbjct: 208 KKYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKDRRY 267

Query: 203 KQSNDETVSH 212
            Q ++    H
Sbjct: 268 DQLHNVEEKH 277


>AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 10/108 (9%)

Query: 83  MLPRRPQSIKKPTDQTNRVQGLKNKRMMFDSDLDNSITVEHNRHRKQMCLKDTPIKVEDI 142
           ML RR     KP  +   ++ + NK         N IT EH R    + ++ +  + +  
Sbjct: 158 MLKRRTGEGSKPIFEREEIKNILNKT--------NEIT-EH-RTVLAVNIEKSENETKTC 207

Query: 143 KRKSLLDDSMRDASGYVSNDNSDGDSAEKEDSSDETKYDSDGDEPVSR 190
           K+ ++  +S+R  S      +S     E     D   Y +DG+   SR
Sbjct: 208 KKYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSR 255


>AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 10/108 (9%)

Query: 83  MLPRRPQSIKKPTDQTNRVQGLKNKRMMFDSDLDNSITVEHNRHRKQMCLKDTPIKVEDI 142
           ML RR     KP  +   ++ + NK         N IT EH R    + ++ +  + +  
Sbjct: 158 MLKRRTGEGSKPIFEREEIKNILNKT--------NEIT-EH-RTVLAVNIEKSENETKTC 207

Query: 143 KRKSLLDDSMRDASGYVSNDNSDGDSAEKEDSSDETKYDSDGDEPVSR 190
           K+ ++  +S+R  S      +S     E     D   Y +DG+   SR
Sbjct: 208 KKYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSR 255


>AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 10/108 (9%)

Query: 83  MLPRRPQSIKKPTDQTNRVQGLKNKRMMFDSDLDNSITVEHNRHRKQMCLKDTPIKVEDI 142
           ML RR     KP  +   ++ + NK         N IT EH R    + ++ +  + +  
Sbjct: 158 MLKRRTGEGSKPIFEREEIKNILNKT--------NEIT-EH-RTVLAVNIEKSENETKTC 207

Query: 143 KRKSLLDDSMRDASGYVSNDNSDGDSAEKEDSSDETKYDSDGDEPVSR 190
           K+ ++  +S+R  S      +S     E     D   Y +DG+   SR
Sbjct: 208 KKYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSR 255


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 10/108 (9%)

Query: 83  MLPRRPQSIKKPTDQTNRVQGLKNKRMMFDSDLDNSITVEHNRHRKQMCLKDTPIKVEDI 142
           ML RR     KP  +   ++ + NK         N IT EH R    + ++ +  + +  
Sbjct: 158 MLKRRTGEGSKPIFEREEIKNILNKT--------NEIT-EH-RTVLAVNIEKSENETKTC 207

Query: 143 KRKSLLDDSMRDASGYVSNDNSDGDSAEKEDSSDETKYDSDGDEPVSR 190
           K+ ++  +S+R  S      +S     E     D   Y +DG+   SR
Sbjct: 208 KKYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSR 255


>AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 10/108 (9%)

Query: 83  MLPRRPQSIKKPTDQTNRVQGLKNKRMMFDSDLDNSITVEHNRHRKQMCLKDTPIKVEDI 142
           ML RR     KP  +   ++ + NK         N IT EH R    + ++ +  + +  
Sbjct: 158 MLKRRTGEGSKPIFEREEIKNILNKT--------NEIT-EH-RTVLAVNIEKSENETKTC 207

Query: 143 KRKSLLDDSMRDASGYVSNDNSDGDSAEKEDSSDETKYDSDGDEPVSR 190
           K+ ++  +S+R  S      +S     E     D   Y +DG+   SR
Sbjct: 208 KKYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDGNSYRNDGERSCSR 255


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 407 QSELATEETGNKENYIKYDDDVTIVDTKPEVIQLSSDDEDEVKIEHKTSNVKKSPKIKNE 466
           +S+  + ++ ++ N       V + D  PE IQ+++ +  ++K+E       KS     E
Sbjct: 79  RSKSRSPDSRDRSNASNTSKTVILSDKGPEGIQINATELQKIKLEIHRDLPGKSTTTTVE 138

Query: 467 ADKSPKKSRDNTIKSYLVPPSYPNQGVVYVKKSIRENELFKLNSLKE 513
                K+   N     L+  +      ++ ++ I+ N L K+N +KE
Sbjct: 139 V----KRDIINPEDVILIRRTGEGSKPIFEREEIK-NVLTKINKIKE 180


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 175 SDETKYDSDGDEPVSRLDIEGHKSNSENKQSNDE 208
           S+E K+D +    +    ++G K    N  SND+
Sbjct: 432 SEEQKFDDEAHWELEEESLQGSKIKESNSCSNDQ 465


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 407 QSELATEETGNKENYIKYDDDVTIVDTKPEVIQLSSDDEDEVKIEHKTSNVKKSPKIKNE 466
           +S+  + ++ +K N       + + D  PE IQ+++ +  ++K+E       KS     E
Sbjct: 79  RSKSRSPDSRDKSNTSNTSKTIILSDKGPEGIQINATELQKIKLEIHRDLPGKSTTTSVE 138

Query: 467 ADKSPKKSRDNTIKSYLVPPSYPNQGVVYVKKSIRENELFKLNSLKE 513
                K+   N     L+  +      ++ ++ I+ N L K+N ++E
Sbjct: 139 V----KRDIINPEDVILIRRTGEGSKPIFEREEIK-NVLTKINKIEE 180


>AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 10/108 (9%)

Query: 83  MLPRRPQSIKKPTDQTNRVQGLKNKRMMFDSDLDNSITVEHNRHRKQMCLKDTPIKVEDI 142
           ML RR     KP  +   ++ + NK         N IT EH R    + ++ +  + +  
Sbjct: 158 MLKRRTGEGSKPIFEREEIKNILNKT--------NEIT-EH-RTVLAVNIEKSENETKTC 207

Query: 143 KRKSLLDDSMRDASGYVSNDNSDGDSAEKEDSSDETKYDSDGDEPVSR 190
           K+ ++  +S+R  S      +S     E     D   Y +DG+   SR
Sbjct: 208 KKYAISSNSLRSRSRSFQRTSSCHSRYEDLRHEDRNSYRNDGERSCSR 255


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 263 KNGSHGNSIDDKSNLDFDDNEKWSSKTSACESDLDGPDEYEMAVRRATRKSIMGFIPNEN 322
           +N  + N+ +  +N    DN+  + +    ++D    D  +   R+   K       N N
Sbjct: 430 QNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQ------NGN 483

Query: 323 NDSDESDCIQSDESHRISGHSDVMQEENQNNKEGSRSVKTPERDGDNSR 371
             +D          ++ + +      +N N + G+R         DN+R
Sbjct: 484 RQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNR 532



 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/39 (23%), Positives = 20/39 (51%)

Query: 320 NENNDSDESDCIQSDESHRISGHSDVMQEENQNNKEGSR 358
           N+ ND+ ++   Q+D     +  +D    +N NN+  ++
Sbjct: 498 NKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRNDNQ 536


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 143 KRKSLLDDSMRDASGYVSNDNSDGDSAEKEDSSDETKYDSDGDEPVSRLDIEGHKSNSEN 202
           +  S L+D+++     ++  NS   +   EDSSD     S  D P +      H++ SE+
Sbjct: 231 EENSPLEDNIKCEPLELTGGNSGNAAGNNEDSSDSGAAAS--DRPPASASSNEHEAESEH 288


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 407 QSELATEETGNKENYIKYDDDVTIVDTKPEVIQLSSDDEDEVKIEHKTSNVKKSPKIKNE 466
           +S+  + ++ ++ N       V + D  PE IQ+++ +  ++K+E       KS     E
Sbjct: 79  RSKSRSPDSRDRSNASNTSKTVILSDKGPEGIQINATELQKIKLEIHRDLPGKSTTTTVE 138

Query: 467 ADKSPKKSRDNTIKSYLVPPSYPNQGVVYVKKSIRENELFKLNSLKE 513
                K+   N     L+  +      ++ ++ I+ N L K+N ++E
Sbjct: 139 V----KRDIINPEDVILIRRTGEGSKPIFEREEIK-NVLTKINKIEE 180


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.129    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 345,226
Number of Sequences: 429
Number of extensions: 13957
Number of successful extensions: 51
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 23
length of query: 1394
length of database: 140,377
effective HSP length: 66
effective length of query: 1328
effective length of database: 112,063
effective search space: 148819664
effective search space used: 148819664
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 49 (23.8 bits)