GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004877-TA|BGIBMGA004877-PA|IPR002318|Alanyl-tRNA
synthetase, class IIc
         (731 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.54 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.54 
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    25   2.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   3.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   8.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.1 bits (57), Expect = 0.54
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 360  SAKLIIEHEAQAYA----KMRAGLVKKWKDLVMRYPEVESLNDVETPGFALGYKEFKETV 415
            SA+LI+  E Q  A     + A  +   + L+   P +  L   +  GF +GY+E   + 
Sbjct: 994  SAELIVRTEPQRPAGPPINLEARALSSSEILITWSPPLPELRHGDIQGFNVGYRETSSSN 1053

Query: 416  SKLNTSIIPGE 426
               N S + G+
Sbjct: 1054 PSYNFSSVSGD 1064


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.1 bits (57), Expect = 0.54
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 360  SAKLIIEHEAQAYA----KMRAGLVKKWKDLVMRYPEVESLNDVETPGFALGYKEFKETV 415
            SA+LI+  E Q  A     + A  +   + L+   P +  L   +  GF +GY+E   + 
Sbjct: 990  SAELIVRTEPQRPAGPPINLEARALSSSEILITWSPPLPELRHGDIQGFNVGYRETSSSN 1049

Query: 416  SKLNTSIIPGE 426
               N S + G+
Sbjct: 1050 PSYNFSSVSGD 1060


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 437 LQEELINRIAELNNMTTDKEGFQQLLSKHKHRHKTAFKEQALNKTILFNDAIDRLIK--- 493
           L EE  +R     +   +++ ++   S  K+R  +  KE++ ++T        ++I    
Sbjct: 262 LLEERTSRKRYSRSREREQKSYKNENSYRKYRETS--KERSRDRTERERSKERKIISSLS 319

Query: 494 NGISRTNDLFKYNYEITDSKLEFK 517
           N  +  N+ +KYNY   + KL +K
Sbjct: 320 NNYNYNNNNYKYNYNNYNKKLYYK 343


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 372 YAKMRAGLVKKWKDLVMRYPEVESLNDVETPG 403
           ++K+ A  VKK KD+++  P+ ES   + T G
Sbjct: 691 FSKLFAKKVKKDKDIILNVPK-ESTQSLTTTG 721


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 379 LVKKWKDLVMRYPEVESLNDV 399
           LVK+W+D V  Y E    +++
Sbjct: 274 LVKEWRDFVDNYAEENKRDEI 294


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,825
Number of Sequences: 429
Number of extensions: 8908
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 5
length of query: 731
length of database: 140,377
effective HSP length: 63
effective length of query: 668
effective length of database: 113,350
effective search space: 75717800
effective search space used: 75717800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)