GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004875-TA|BGIBMGA004875-PA|IPR003749|ThiamineS
         (91 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   0.19 
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    26   0.78 
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   2.4  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    24   3.1  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    24   3.1  
SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil...    23   5.5  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    23   5.5  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    23   5.5  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    23   7.2  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    23   7.2  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    23   7.2  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    23   9.6  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    23   9.6  

>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 0.19
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 19  KSKELSGVRETSITLPRKLGYQRLLNIICDKYNLNSIKKNILLAKNEVVCEDTVDIE 75
           KSK     ++  + +P+K G  ++         + S KK  L+ KN    EDT D+E
Sbjct: 80  KSKSKDSSKKEPVVVPKK-GTPKIFQENHKVKKVKSPKKEKLVGKNPAEKEDTTDVE 135


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 26.2 bits (55), Expect = 0.78
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 52  LNSIKKNILLAKNEVVCEDTVDIEINEQDNL 82
           LNS KK   +   ++  ED+++  +N+++NL
Sbjct: 428 LNSEKKTFEILSTDIPAEDSMNSLLNDEENL 458


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 68  CEDTVDIEINEQDNLAV 84
           C+ T D EINE+DN +V
Sbjct: 367 CKVTSDEEINEEDNYSV 383


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 34  PRKLGYQRLLNIICDKYNLNSIKKNILLAKNEV 66
           P+  G   L++ + D Y+LNSI   ++++ +E+
Sbjct: 380 PKGCGKSNLVHSLFDYYSLNSIYFQMIVSCSEI 412


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 20  SKELSGVRETSITLPRKLGYQRLLNIICDKYNLNSIKKNILL-------AKNEVVCEDTV 72
           S +L  V    +    K+  ++L  +    YN+  + KN L+         N  V ED V
Sbjct: 465 SDDLRNVFNQDLDFDEKMFSRQLSLVKGQAYNIVEVLKNPLMNIYDLLELPNLYVVEDVV 524

Query: 73  DIEINE 78
            IE+NE
Sbjct: 525 RIEVNE 530


>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 41  RLLNIICDKYNLNSIKKNILLAKNEVVCEDTVDIEINE 78
           R L  +C  +N    + N LL +  + C D +D+ I E
Sbjct: 102 RDLGTVC-LHNPKLFQGNKLLKRTGIKCGDKIDVTIKE 138


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 16/72 (22%), Positives = 32/72 (44%)

Query: 4   ENIEDTVTVKLLFFAKSKELSGVRETSITLPRKLGYQRLLNIICDKYNLNSIKKNILLAK 63
           ++ ED+V   L+F   S ++    +    +     Y  ++N  C  +NL+  K N L   
Sbjct: 181 QHSEDSVLTHLVFNGNSDDVLLSTDHLGKIAVHEFYNLVINKHCTSWNLDMSKSNSLNLD 240

Query: 64  NEVVCEDTVDIE 75
           + +V   ++  E
Sbjct: 241 SIIVDTSSISFE 252


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 60  LLAKNEVVCEDTVDIEINEQDNLAVIPPL 88
           L A  E +  +T   +IN Q++++++PPL
Sbjct: 109 LKALQEFLVLETEAGDINRQESVSMVPPL 137


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 7/32 (21%), Positives = 18/32 (56%)

Query: 48  DKYNLNSIKKNILLAKNEVVCEDTVDIEINEQ 79
           +K+N   +K N+++   ++V    +D+   E+
Sbjct: 640 EKFNYEHLKSNLVINSQDLVLPKRLDLAATEE 671


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 29  TSITLPRKLGYQRLLNIICDKYNLNSIKKNI 59
           TS T PR+LG +       +  N+NS K ++
Sbjct: 962 TSATRPRRLGSRTFQGFNSNHSNINSKKDDL 992


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 319

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 61 LAKNEVVCEDTVDIEINEQDNL 82
          LAKN  +C   +  E+N+  NL
Sbjct: 39 LAKNAYLCASEIANELNQNPNL 60


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 6/23 (26%), Positives = 14/23 (60%)

Query: 35  RKLGYQRLLNIICDKYNLNSIKK 57
           ++  ++  +N +C  Y + S+KK
Sbjct: 467 QRTNFKNRVNCLCQNYTIGSLKK 489


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 31  ITLPRKLGYQRLLNIICDKYNLNSIKKNILLAKNEVVCED-TVDIEINEQDNL 82
           I L R+   Q ++ +   +   NS+ K I +++ +  C D  VD  ++ Q++L
Sbjct: 946 ILLTRRF-VQDIVRVCTHRLAYNSLLKIISISQGDTACGDLVVDAILDTQNDL 997


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.137    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 395,502
Number of Sequences: 5004
Number of extensions: 14095
Number of successful extensions: 50
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 14
length of query: 91
length of database: 2,362,478
effective HSP length: 61
effective length of query: 30
effective length of database: 2,057,234
effective search space: 61717020
effective search space used: 61717020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 46 (22.6 bits)