Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA004875-TA|BGIBMGA004875-PA|IPR003749|ThiamineS
(91 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0237 + 21184480-21184809 55 8e-09
01_06_0012 + 25575196-25575198,25575769-25575945,25576034-255760... 29 0.36
02_04_0525 - 23672984-23673085,23673315-23673419,23673820-236739... 27 1.9
02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465... 27 1.9
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 27 2.6
01_01_0377 + 2930913-2931530,2931646-2931753 27 2.6
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938... 25 5.9
06_01_0211 + 1604799-1605037,1605420-1605575,1605972-1606043,160... 25 5.9
>02_04_0237 + 21184480-21184809
Length = 109
Score = 54.8 bits (126), Expect = 8e-09
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 10 VTVKLLFFAKSKELSGVRETSITLPR-KLGYQRLLNIICDKYNLNSIKKNILLAKNEVVC 68
V VK+LFFA++++L+GV E + +P L ++ L I+++++LA NE
Sbjct: 29 VKVKVLFFARARDLTGVTEAPVEVPAGSTAGDCLARVLAAFPRLEEIRRSMVLALNEEYA 88
Query: 69 EDTVDIEINEQDNLAVIPPLSGG 91
+ D + + D LA+IPP+SGG
Sbjct: 89 PE--DAAVGDGDELAIIPPISGG 109
>01_06_0012 +
25575196-25575198,25575769-25575945,25576034-25576078,
25576164-25576371,25576685-25576875,25577078-25577473
Length = 339
Score = 29.5 bits (63), Expect = 0.36
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 1 MEIENIEDTVTVKLLFFA--KSKELSGVRETSITL-PRKLGYQRLLNIIC 47
++ ENI T T+K + FA S SG+ T + L P ++ + RL N C
Sbjct: 255 VQYENIRGTFTIKPVHFACSDSSPCSGITLTGVQLRPVQISHYRLNNPFC 304
>02_04_0525 -
23672984-23673085,23673315-23673419,23673820-23673979,
23674085-23674162,23674383-23674524,23674641-23674785,
23674888-23674950,23675042-23675101,23675364-23675441,
23675524-23675598,23675744-23675860,23675960-23676190,
23676300-23676419,23676512-23676588,23676669-23676769,
23676844-23676950,23677094-23677251,23677383-23677599
Length = 711
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/61 (21%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 26 VRETSITLPRKLGYQRLLNIICDKYNLNSIKKNILLAKNEVVCEDTVDIEINEQDNLAVI 85
VR+ I R + + ++L++ + S + +L+AK+ DT+++E + + + ++
Sbjct: 15 VRDGGIGFTRSVDFAKILSVPAT-LRVGSSRGRVLVAKSSSTGSDTMELEPSSEGSPLLV 73
Query: 86 P 86
P
Sbjct: 74 P 74
>02_01_0622 -
4658133-4658150,4658269-4658337,4658436-4658462,
4658808-4658873,4658954-4659076,4659562-4659629,
4659703-4659766,4659994-4660135,4660218-4660306,
4660574-4660637,4660870-4661021,4661124-4661261,
4661742-4661867,4661971-4662183,4662343-4662426,
4662583-4662742,4662993-4663126,4664047-4664136,
4664313-4664471,4665528-4665611,4666170-4666289,
4666338-4666391,4666899-4666945,4667556-4667598,
4667730-4668586,4668845-4668899
Length = 1081
Score = 27.1 bits (57), Expect = 1.9
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 19 KSKELSGVRETSITLPRKLGYQRLLNIICDKYNLNSIKKNILLAKNEVVCEDTVD 73
+ K ++ S+ LP + +RLL Y L +KK ++ K+E V EDT+D
Sbjct: 234 RQKIITATSRRSVPLPSNMKKRRLLIDQMKTYVL--MKKLGIITKDEEVDEDTMD 286
>01_06_0004 +
25507739-25508206,25509346-25509477,25509910-25510086,
25510175-25510219,25510305-25510512,25510766-25510825,
25510826-25511016,25511219-25511614
Length = 558
Score = 26.6 bits (56), Expect = 2.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 1 MEIENIEDTVTVKLLFFA--KSKELSGVRETSITL-PRKLGYQRLLNIIC 47
++ ENI T T+K + FA S SG+ T + L P ++ + RL + C
Sbjct: 474 VQYENIRGTFTIKPVHFACSDSSPCSGITLTGVQLRPVQIPHYRLNDPFC 523
>01_01_0377 + 2930913-2931530,2931646-2931753
Length = 241
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 11 TVKLLFFAKSKELSGVRETSITLPRKLGYQRLLNIICDKYNLNSIKKNILLAKNEVVCE 69
+V LL K+LS ++E ++ K+G + +L I+ ++ ++ L K +V C+
Sbjct: 180 SVSLLAQCGVKDLSALQERTV----KIGKEEVLEILLASLKSKTVLTDVFLPKRKVSCK 234
>10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,
9387180-9387325,9387416-9387572,9387720-9387778,
9388204-9388360,9389001-9389150,9389280-9389416,
9390071-9390217,9390292-9390393,9390742-9390799,
9391997-9392034,9392124-9392250,9392320-9392493,
9393125-9393256,9393940-9394049,9394752-9394812,
9395036-9395213,9395326-9395531,9395796-9395915,
9396496-9396594,9396983-9397204,9397482-9397621,
9397741-9397852,9398021-9398071,9398151-9398240,
9398397-9398567,9398663-9398815,9399774-9399950,
9400045-9400182,9400295-9400365,9400739-9400838,
9401324-9401380,9401469-9401525,9401619-9401699,
9401782-9401864,9401975-9402110
Length = 1632
Score = 25.4 bits (53), Expect = 5.9
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 2 EIENIEDTVTVKLLFFAKSKELSGVR-ETSITLPRKLGYQRLLNIICDKYNLNSIKKNIL 60
E+ I V ++ + K+L +R E L + Y+ DKYN I ++
Sbjct: 1503 ELNYIRQAVGFLVIHQKRKKKLEEIRNELCPNLSVRQIYRICSMYWDDKYNTQGISNEVV 1562
Query: 61 LAKNEVVCEDTVDIEIN 77
A E V +DT ++ N
Sbjct: 1563 SAMREEVNKDTQNLVSN 1579
>06_01_0211 +
1604799-1605037,1605420-1605575,1605972-1606043,
1606325-1606396,1606608-1606679,1606777-1606848,
1606936-1607007,1607092-1607160,1607278-1607349,
1607630-1607701,1607786-1607857,1607940-1608011,
1608100-1608171,1608286-1608357,1608449-1608520,
1608633-1608704,1608801-1608872,1608962-1609033,
1609120-1609191,1609283-1609353,1609439-1609570,
1609676-1610014,1610097-1610467,1610599-1610928,
1611115-1611150
Length = 964
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 38 GYQRLLNIICDKYNLNSIKKNILLAKNEVVCEDTVDIEINE 78
G+Q+L ++ + N+ K NI ++ DT+D+ NE
Sbjct: 385 GFQKLESLTYLNLSSNNFKGNIPSELGHIINLDTLDLSYNE 425
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.137 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,003
Number of Sequences: 37544
Number of extensions: 68550
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 154
Number of HSP's gapped (non-prelim): 8
length of query: 91
length of database: 14,793,348
effective HSP length: 69
effective length of query: 22
effective length of database: 12,202,812
effective search space: 268461864
effective search space used: 268461864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 52 (25.0 bits)
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