GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004875-TA|BGIBMGA004875-PA|IPR003749|ThiamineS
         (91 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF117815-1|AAD13296.1|   88|Homo sapiens molybdopterin synthase ...    48   5e-06
AF091871-1|AAD14598.1|   88|Homo sapiens molybdopterin-synthase ...    48   5e-06
BC019562-1|AAH19562.1|  373|Homo sapiens SLC43A2 protein protein.      31   0.74 

>AF117815-1|AAD13296.1|   88|Homo sapiens molybdopterin synthase
          small subunit protein.
          Length = 88

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 2/82 (2%)

Query: 12 VKLLFFAKSKELSGVRETSITLPRKLGYQRLLNIICDKY-NLNSIKKNILLA-KNEVVCE 69
          V++L+FAKS E++GVR  +I++P+++   +L   I  ++  L  ++  I+ A + E V  
Sbjct: 7  VEVLYFAKSAEITGVRSETISVPQEIKALQLWKEIETRHPGLADVRNQIIFAVRQEYVEL 66

Query: 70 DTVDIEINEQDNLAVIPPLSGG 91
              + +   D +AVIPP+SGG
Sbjct: 67 GDQLLVLQPGDEIAVIPPISGG 88


>AF091871-1|AAD14598.1|   88|Homo sapiens molybdopterin-synthase
          small subunit protein.
          Length = 88

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 2/82 (2%)

Query: 12 VKLLFFAKSKELSGVRETSITLPRKLGYQRLLNIICDKY-NLNSIKKNILLA-KNEVVCE 69
          V++L+FAKS E++GVR  +I++P+++   +L   I  ++  L  ++  I+ A + E V  
Sbjct: 7  VEVLYFAKSAEITGVRSETISVPQEIKALQLWKEIETRHPGLADVRNQIIFAVRQEYVEL 66

Query: 70 DTVDIEINEQDNLAVIPPLSGG 91
              + +   D +AVIPP+SGG
Sbjct: 67 GDQLLVLQPGDEIAVIPPISGG 88


>BC019562-1|AAH19562.1|  373|Homo sapiens SLC43A2 protein protein.
          Length = 373

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 51  NLNSIKKNILLAKNEVVCEDTVDIEINEQDNLAVIP 86
           ++ S K+ + L +   +C  TVD+E+  Q + AV+P
Sbjct: 82  SMRSAKEQVALQEGHKLCLSTVDLEVKCQPDAAVVP 117


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.316    0.137    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,620,669
Number of Sequences: 224733
Number of extensions: 382984
Number of successful extensions: 747
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 742
Number of HSP's gapped (non-prelim): 3
length of query: 91
length of database: 73,234,838
effective HSP length: 69
effective length of query: 22
effective length of database: 57,728,261
effective search space: 1270021742
effective search space used: 1270021742
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 57 (27.1 bits)