Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA004875-TA|BGIBMGA004875-PA|IPR003749|ThiamineS
(91 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21322-7|AAA62545.1| 84|Caenorhabditis elegans Hypothetical pr... 53 2e-08
AL110478-11|CAE17956.3| 758|Caenorhabditis elegans Hypothetical... 31 0.14
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 28 0.73
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 28 0.73
AC024756-4|AAX88819.1| 639|Caenorhabditis elegans Hypothetical ... 26 3.0
L12018-11|AAA65467.1| 348|Caenorhabditis elegans Hypothetical p... 26 3.9
AF098985-1|AAC67419.2| 882|Caenorhabditis elegans Hypothetical ... 26 3.9
Z46267-2|CAC42301.1| 600|Caenorhabditis elegans Hypothetical pr... 25 9.0
Z46267-1|CAC42302.1| 389|Caenorhabditis elegans Hypothetical pr... 25 9.0
U39849-4|AAA81047.1| 349|Caenorhabditis elegans Hypothetical pr... 25 9.0
AC084156-4|AAK68488.1| 254|Caenorhabditis elegans Hypothetical ... 25 9.0
>U21322-7|AAA62545.1| 84|Caenorhabditis elegans Hypothetical
protein K10D2.7 protein.
Length = 84
Score = 53.2 bits (122), Expect = 2e-08
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 10 VTVKLLFFAKSKELSGVRETSITLPRKLGYQRLLNIICDKYN-LNSIKKNILLAKNEVVC 68
+++K+LFF ++ +L G RE +I P + Y+ + I + Y L I+K ++LA ++
Sbjct: 2 ISIKVLFFGEACQLVGKREEAIDFPEETDYEEIRKTILENYPALQKIEKVMMLAVDQEYA 61
Query: 69 EDTVDIEINEQDNLAVIPPLSGG 91
E+ +AVIPPLSGG
Sbjct: 62 NPGDRFELVRFTEIAVIPPLSGG 84
>AL110478-11|CAE17956.3| 758|Caenorhabditis elegans Hypothetical
protein Y26D4A.13 protein.
Length = 758
Score = 30.7 bits (66), Expect = 0.14
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 7 EDTVTVKLLFFAKSKELSGVRETSITLPRKLGYQRLLNIICDKYNLNSIK-KNILLAKNE 65
E+TV + F +KE+ G ++ +I LP+ L Y++LLN +K N++ IK K++ K +
Sbjct: 445 ENTVNPTVEFNTINKEIVGSKKINILLPKHL-YKKLLN--KNKSNISIIKVKDVYCLKQD 501
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 28.3 bits (60), Expect = 0.73
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 6 IEDTVTVKLLFFAKSKELSGVRETSITLP 34
+ED + V L F++S+E+ +RE + LP
Sbjct: 894 VEDAIRVWTLVFSQSEEVEELRERQVVLP 922
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 28.3 bits (60), Expect = 0.73
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 6 IEDTVTVKLLFFAKSKELSGVRETSITLP 34
+ED + V L F++S+E+ +RE + LP
Sbjct: 894 VEDAIRVWTLVFSQSEEVEELRERQVVLP 922
>AC024756-4|AAX88819.1| 639|Caenorhabditis elegans Hypothetical
protein Y34D9A.3 protein.
Length = 639
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 36 KLGYQRLLNIICDKYNLNSIKK-NILLAKNEVVCEDTVD 73
K + +++NII DKY NS++ N L + VCE VD
Sbjct: 539 KTPFCQIVNIIVDKYVKNSVEPVNFQLFRE--VCERAVD 575
>L12018-11|AAA65467.1| 348|Caenorhabditis elegans Hypothetical
protein F22B7.1 protein.
Length = 348
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 27 RETSITLPRKLGYQRLLNIICDKYNLNSIKKNILLAKNEVVCEDTVDIEINEQDNLAVI 85
RET + Y++L +I K +N +KN+L NE + + ++E ++ + V+
Sbjct: 89 RETLKAYVKDKTYEKLKYVIDSKVKMNRNEKNVLGRINESLVQSIDNLEHFDEITVDVV 147
>AF098985-1|AAC67419.2| 882|Caenorhabditis elegans Hypothetical
protein C08G5.1 protein.
Length = 882
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 3 IENIEDTVTVKLLFFAKSKELSGVRETSITLPRKLGYQRL 42
IEN E+T T AK ++ G+ IT+ ++ Q++
Sbjct: 583 IENSENTKTESFASIAKDSQVVGMATRGITIMEQMASQKV 622
>Z46267-2|CAC42301.1| 600|Caenorhabditis elegans Hypothetical
protein F49E2.1b protein.
Length = 600
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 37 LGYQRLLNIICDKY 50
+GY+ +LN+I DKY
Sbjct: 265 IGYREMLNLIVDKY 278
>Z46267-1|CAC42302.1| 389|Caenorhabditis elegans Hypothetical
protein F49E2.1a protein.
Length = 389
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 37 LGYQRLLNIICDKY 50
+GY+ +LN+I DKY
Sbjct: 265 IGYREMLNLIVDKY 278
>U39849-4|AAA81047.1| 349|Caenorhabditis elegans Hypothetical
protein C06A8.6 protein.
Length = 349
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 2 EIENIEDTVTVKLLFFAKSK--ELSGVRETSITLPRKLGYQRLLNIICDKYNLNSIKKNI 59
+IEN+E +K LFF +K ++ G+ + +LG R+ I + + N +
Sbjct: 112 KIENLEKLTKLKTLFFVHNKITKIEGLDTLTELEYLELGDNRIAKI--ENLDNNLKLDRL 169
Query: 60 LLAKNEVVCEDTVD 73
L N++ + VD
Sbjct: 170 FLGANQIRLIENVD 183
>AC084156-4|AAK68488.1| 254|Caenorhabditis elegans Hypothetical
protein Y46E12BL.1 protein.
Length = 254
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 47 CDKYNLNSIKKNILLAKNEVVCEDT-VDIEINEQDNL 82
C +Y++NSI IL A + +DT + I + E D L
Sbjct: 41 CFQYSINSINHEILSASLIIDPKDTNISIVVYEVDEL 77
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.137 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,862
Number of Sequences: 27539
Number of extensions: 71041
Number of successful extensions: 165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 11
length of query: 91
length of database: 12,573,161
effective HSP length: 69
effective length of query: 22
effective length of database: 10,672,970
effective search space: 234805340
effective search space used: 234805340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 51 (24.6 bits)
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