GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004875-TA|BGIBMGA004875-PA|IPR003749|ThiamineS
         (91 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    25   0.11 
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    25   0.11 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   1.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   1.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   2.4  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    19   7.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    19   9.8  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 25.4 bits (53), Expect = 0.11
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 11/69 (15%)

Query: 1   MEIENIEDTVTVKLLFFAKSKELSGVRETSITLPRKLGYQRLLNIICDKYNLNSIKKNIL 60
           ME+ NIE T  VK++++      S  RE  + LP          ++C  Y    + +N++
Sbjct: 284 MELHNIEGTHYVKIVYYLGIP--SEARE--LQLPG-------CEVLCPLYKYLQLIENVI 332

Query: 61  LAKNEVVCE 69
            +  E++C+
Sbjct: 333 PSNEELICD 341


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 25.4 bits (53), Expect = 0.11
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 11/69 (15%)

Query: 1   MEIENIEDTVTVKLLFFAKSKELSGVRETSITLPRKLGYQRLLNIICDKYNLNSIKKNIL 60
           ME+ NIE T  VK++++      S  RE  + LP          ++C  Y    + +N++
Sbjct: 299 MELHNIEGTHYVKIVYYLGIP--SEARE--LQLPG-------CEVLCPLYKYLQLIENVI 347

Query: 61  LAKNEVVCE 69
            +  E++C+
Sbjct: 348 PSNEELICD 356


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 29  TSITLPRKLGYQRLLNIICDK 49
           T +T+PR  G    LN+I +K
Sbjct: 80  TFVTVPRYKGVPSSLNVISEK 100


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 54  SIKKNILLAKNEVVCEDTVDIEINEQ 79
           +I +NI  AKN ++     D+ INE+
Sbjct: 416 NIAQNIDHAKNTIIDYRNNDLSINEE 441


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 11/79 (13%)

Query: 14  LLFFAKSKELSGVRETSITLPRKLGYQRLLNIICDKYNLNSIKKNILLAK-NEVVCEDTV 72
           ++F+ KS  L+     S+ L   L Y + L++    + ++S+ +++L +K  +V     +
Sbjct: 307 MVFYEKSLALAAF---SLMLTSILRYLQELHVDAPTW-ISSVTESVLKSKIGQVFLITIL 362

Query: 73  D------IEINEQDNLAVI 85
           D      IE+NE DN +++
Sbjct: 363 DSKVSARIEMNEDDNTSLV 381


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
          protein.
          Length = 149

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 6/19 (31%), Positives = 13/19 (68%)

Query: 50 YNLNSIKKNILLAKNEVVC 68
          Y +  +KK+I++  ++V C
Sbjct: 12 YAIKILKKDIIIQDDDVEC 30


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
          acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 40 QRLLNIICDKYNL 52
          +RLLN + D YN+
Sbjct: 25 KRLLNDLLDTYNV 37


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.137    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,728
Number of Sequences: 429
Number of extensions: 897
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 91
length of database: 140,377
effective HSP length: 48
effective length of query: 43
effective length of database: 119,785
effective search space:  5150755
effective search space used:  5150755
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.7 bits)
S2: 37 (19.0 bits)