GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004873-TA|BGIBMGA004873-PA|IPR001247|Exoribonuclease,
IPR008994|Nucleic acid-binding, OB-fold, IPR009019|KH, prokaryotic
type, IPR004088|KH, type 1, IPR003029|RNA binding S1
         (569 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    26   0.73 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   2.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   9.0  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 26.2 bits (55), Expect = 0.73
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 146 DFTHDKTSRDNAISDLRQTVLNQFRDTN 173
           DFT D T RDN + +  +T+  + ++TN
Sbjct: 122 DFTSDVTERDNHLVNAFKTLTQEPKNTN 149


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 122 PPLEQNIVDTIKILSSMKIREILSDFTHD 150
           PP+E  +  T+ +LS   + E+L DFT D
Sbjct: 34  PPVEVGV--TMYVLSISSVSEVLMDFTLD 60


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 42  DNELIINPTRKELEKSVLNLIVTATSSNLVVMLEGSASDILQQDLLKAIKLGTK 95
           D EL      KE+EK++L  +++         LEGS  D L+  L +  + G +
Sbjct: 698 DKELSGAEEEKEVEKALLKPLLSLEDLVRFSTLEGSGGDSLRTLLQRGQETGAE 751


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 248 ALRVDTLTMLTSGIKEKSFFLHYEFPPYATGE 279
           +L V  L +L SG+  + +++   F PY  GE
Sbjct: 94  SLAVSDLLLLISGLPPEIYYIWSHF-PYVFGE 124


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,724
Number of Sequences: 429
Number of extensions: 6519
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 4
length of query: 569
length of database: 140,377
effective HSP length: 61
effective length of query: 508
effective length of database: 114,208
effective search space: 58017664
effective search space used: 58017664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)