GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004867-TA|BGIBMGA004867-PA|IPR011038|Calycin-like
         (175 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.2  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   8.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.9  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 70  YNDNKTETYSFLDINYEHYAVVF 92
           YN+N    Y++ + NY +Y  ++
Sbjct: 96  YNNNNYNNYNYNNNNYNNYKKLY 118


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 71  NDNKTETYSFLDINYEHYAVVFACYNNDDGSSTYEIWKLTRTP 113
           N+ K   Y+  + NY +Y      YNN+     Y I  + + P
Sbjct: 320 NNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYIEQIP 362


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 115 LKDTDAVKLDQAIANYSLQGTP 136
           L +TD  +++Q +A   ++G P
Sbjct: 238 LSETDIWEVEQILAKKEIKGVP 259


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,791
Number of Sequences: 429
Number of extensions: 2644
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 175
length of database: 140,377
effective HSP length: 54
effective length of query: 121
effective length of database: 117,211
effective search space: 14182531
effective search space used: 14182531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)