GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004866-TA|BGIBMGA004866-PA|IPR011038|Calycin-like,
IPR003057|Invertebrate colouration protein, IPR002345|Lipocalin
         (213 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   3.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   3.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.7  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   8.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 150 FIYIWILSRNPILNDVSKELATKPLSQLGIDVTKIKKDD 188
           F+Y    +R  +  DV K    +  + LG  +TKI K D
Sbjct: 132 FVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKAD 170


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 150 FIYIWILSRNPILNDVSKELATKPLSQLGIDVTKIKKDD 188
           F+Y    +R  +  DV K    +  + LG  +TKI K D
Sbjct: 132 FVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKAD 170


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 141 QYSPLTDKHFIYIWILSRNPILND 164
           +++PLTD   I+ WI    P+L +
Sbjct: 529 EWNPLTDTVPIHTWIHPWLPLLRN 552


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 109 FFENAPRRLRIRRYPFSVLATNYQYYATVYT 139
           F    PR L +RR P+S    +  Y  + YT
Sbjct: 354 FLNWMPRLLMMRRTPYSTPEYDDTYMDSGYT 384


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 1   MLIKHLIFAASFCVVHAYFTLPGKCPADVQLQQEFR 36
           ML + L FA        Y +  G  P D  +  EF+
Sbjct: 247 MLFRKLPFAGLHSHTIIYLSAKGHRPIDDNIDDEFK 282


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.138    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,734
Number of Sequences: 429
Number of extensions: 2937
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 213
length of database: 140,377
effective HSP length: 55
effective length of query: 158
effective length of database: 116,782
effective search space: 18451556
effective search space used: 18451556
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 42 (21.0 bits)